DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5708 and mec-3

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_001023111.1 Gene:mec-3 / 177938 WormBaseID:WBGene00003167 Length:321 Species:Caenorhabditis elegans


Alignment Length:189 Identity:54/189 - (28%)
Similarity:81/189 - (42%) Gaps:42/189 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 ISSSQLS----FMDESSNDFNNQQLIHSNSLIKVCGGCGDKISDRYLLYALD-RYWHNGCLKCHC 107
            :.|..||    .:|....|..||         ..|..|.::|.||| :|.:| |.:|..|:||..
 Worm     4 LESKPLSAISMVIDSIGVDHENQ---------NKCNCCNEQIYDRY-IYRMDNRSYHENCVKCTI 58

  Fly   108 CGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVCSGCGETIPPSELVAKALTGINNIDLQNQQK 172
            |.:.|||   .||.:.|.|.|.:.|........ |:||.:.:.|:::|.|...|:          
 Worm    59 CESPLAE---KCFWKNGRIYCSQHYYKDHSIHR-CAGCKKGVSPTDMVYKLKAGL---------- 109

  Fly   173 QIINCVFHLRCFSCAKCGSSLRPGDRY----TMLGASLVCEQDWHKLLKGPANSNGTLG 227
                 |||:.|..|:.||..|.||::.    ||:..|.:.    |...:...|:.|.:|
 Worm   110 -----VFHVECHCCSLCGRHLSPGEQILVDDTMMTVSCMS----HYPPQMDDNAPGAIG 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 22/54 (41%)
LIM 142..212 CDD:413332 20/73 (27%)
mec-3NP_001023111.1 LIM 29..84 CDD:395333 23/58 (40%)
LIM 89..135 CDD:413332 17/60 (28%)
Homeodomain 218..274 CDD:459649
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.