DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and lin-11

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_492696.1 Gene:lin-11 / 172893 WormBaseID:WBGene00003000 Length:405 Species:Caenorhabditis elegans


Alignment Length:203 Identity:65/203 - (32%)
Similarity:91/203 - (44%) Gaps:39/203 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 HTKDTVETNSNISSSQLSFMDE------SSNDFNNQQLIHSNSLIKVCGGCGDKISDRYLLYALD 95
            |.:...:..|..||:.|..:|.      ||....:...|..|.    |..|...|.|||:...|.
 Worm    25 HQQSIEDVGSVTSSATLLLLDSATWMMPSSTTQPHISEISGNE----CAACAQPILDRYVFTVLG 85

  Fly    96 RYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVCSGCGETIPPSELVAKALT 160
            :.||..||:|..|.|.::   .:||:|.||||||.|:|..:  |..|:||...:...:||.:|  
 Worm    86 KCWHQSCLRCCDCRAPMS---MTCFSRDGLILCKTDFSRRY--SQRCAGCDGKLEKEDLVRRA-- 143

  Fly   161 GINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDR-YTMLGASLVCEQDWHKLLK--GPAN- 221
                     :.|     |||:|||.|:.|...|..||: |.|.|...||:.|:....|  .|.: 
 Worm   144 ---------RDK-----VFHIRCFQCSVCQRLLDTGDQLYIMEGNRFVCQSDFQTATKTSTPTSI 194

  Fly   222 ----SNGT 225
                |||:
 Worm   195 HRPVSNGS 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 23/53 (43%)
LIM 142..212 CDD:413332 23/70 (33%)
lin-11NP_492696.1 LIM 68..123 CDD:395333 25/57 (44%)
LIM2_Lhx1_Lhx5 127..182 CDD:188761 23/70 (33%)
Homeodomain 242..298 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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