DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and lim-7

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_491668.1 Gene:lim-7 / 172236 WormBaseID:WBGene00002989 Length:452 Species:Caenorhabditis elegans


Alignment Length:136 Identity:46/136 - (33%)
Similarity:61/136 - (44%) Gaps:19/136 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 VCGGCGDKISDRYLLYALDRY-WHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSG 140
            ||.||..:|||||.|...... :|..||||..|...|.| ..:.|.:.|...|:.||..:|  :.
 Worm    55 VCAGCRLEISDRYFLRVNPNLEFHAQCLKCVQCSRPLDE-NQTAFVKNGQTYCRDDYRRLF--TT 116

  Fly   141 VCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGAS 205
            .||.|......::||.:|  |..|             ||||.||:|..|...|:.|:.:.:...|
 Worm   117 RCSRCHGDFDKTDLVMRA--GPQN-------------VFHLNCFACVACEKRLQTGEEFQIKNNS 166

  Fly   206 LVCEQD 211
            |.|..|
 Worm   167 LYCRSD 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 20/54 (37%)
LIM 142..212 CDD:413332 22/70 (31%)
lim-7NP_491668.1 LIM1_Isl 56..110 CDD:188752 20/54 (37%)
LIM 118..172 CDD:413332 21/68 (31%)
HOX 267..321 CDD:197696
Blue background indicates that the domain is not in the aligned region.

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