DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and Lhx8

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_034843.2 Gene:Lhx8 / 16875 MGIID:1096343 Length:367 Species:Mus musculus


Alignment Length:152 Identity:46/152 - (30%)
Similarity:66/152 - (43%) Gaps:23/152 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 VCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGV 141
            ||..||.:|.|:|||...|..||..||.|..|...|.. .:||:.:...|.||.||...:|..  
Mouse    95 VCSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGTR-- 156

  Fly   142 CSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGASL 206
            ||.||..|..::.|.:|...                |:||.||:|..|...|..|:.:.::...:
Mouse   157 CSRCGRHIHSTDWVRRAKGN----------------VYHLACFACFSCKRQLSTGEEFALVEEKV 205

  Fly   207 VCEQDWHKLL----KGPANSNG 224
            :|...:..:|    :...|.||
Mouse   206 LCRVHFDCMLDNLKREVENGNG 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 21/53 (40%)
LIM 142..212 CDD:413332 17/69 (25%)
Lhx8NP_034843.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..79
LIM1_Lhx7_Lhx8 95..150 CDD:188767 23/55 (42%)
LIM2_Lhx7_Lhx8 157..211 CDD:188769 17/69 (25%)
Homeodomain 247..303 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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