DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and lhx6

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:XP_002941184.1 Gene:lhx6 / 100493242 XenbaseID:XB-GENE-493341 Length:389 Species:Xenopus tropicalis


Alignment Length:217 Identity:54/217 - (24%)
Similarity:85/217 - (39%) Gaps:42/217 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LAAHHQDSSSPENFAPIVIDYRNSNHTKDTVETNSNISSSQLSFMDESSNDFNNQQLIHSNSLIK 76
            :.:|..|.:.|       ......:|:..:..:..::.|...|.....|:..|            
 Frog    49 MMSHSDDENMP-------CSLEKEDHSSPSPPSTPSVCSPPSSSSSVPSDGKN------------ 94

  Fly    77 VCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGV 141
            :|..||.:|.|||||...:..||..||:|..|...|.: .:||:.:...|.||.||.|.||..  
 Frog    95 ICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ-HNSCYIKNKEIFCKMDYFSRFGTK-- 156

  Fly   142 CSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGASL 206
            |:.||..|..|:.|.:|...                .:||.||:|..|...|..|:.:.::...:
 Frog   157 CARCGRQIYASDWVRRARGN----------------AYHLACFACYSCKRQLSTGEEFGLVEEKV 205

  Fly   207 VCEQDW----HKLLKGPANSNG 224
            :|...:    ..|.:...|.||
 Frog   206 LCRIHYDTMIENLKRAAENGNG 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 21/53 (40%)
LIM 142..212 CDD:413332 16/69 (23%)
lhx6XP_002941184.1 LIM1_Lhx6 96..149 CDD:188766 21/53 (40%)
LIM2_Lhx6 157..211 CDD:188768 16/69 (23%)
Homeodomain 246..302 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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