DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and lhx9

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:XP_004913801.1 Gene:lhx9 / 100489035 XenbaseID:XB-GENE-492044 Length:398 Species:Xenopus tropicalis


Alignment Length:255 Identity:79/255 - (30%)
Similarity:111/255 - (43%) Gaps:46/255 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 DILAAHHQDSSSPENFAPIVIDYRNSNHTKDTVETNSNISSSQLSFMDESSNDFNNQQLIHSNSL 74
            :|:.....:|:.|...|.::.......|.:..:|.....|.|..|.:.:.......:..:.|.|.
 Frog     2 EIVGCRTDESAYPFRPAAMLFHGITGGHIQGIMEEMERRSKSADSRLAKGIQVNGRETRMPSLSP 66

  Fly    75 IK--VCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLA-EVGSSCFTRRGLILCKKDYSSMF 136
            .|  :|.|||.||||||.|.|:|:.||..|||  ||...|| |...:||.:.|.|.||:||...|
 Frog    67 EKPALCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESELTCFAKDGSIYCKEDYYRRF 129

  Fly   137 GCSGVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTM 201
            .... |:.|...|..||:|.:|.                ..|:||.||:|..|..:|..||.:.|
 Frog   130 SVQR-CARCHLGISASEMVMRAR----------------ESVYHLSCFTCTTCNKTLSTGDHFGM 177

  Fly   202 --------LGASLVCEQDWHKLL-------KG------PANSNGTLGQRKGKVGRPRRSK 240
                    :...|:.:.|:|:.|       ||      |..||||...:|   ||||:.|
 Frog   178 KENLVYCRIHFELLVQGDFHQQLNYTELSAKGGGIATLPYFSNGTGTVQK---GRPRKRK 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 29/54 (54%)
LIM 142..212 CDD:413332 19/77 (25%)
lhx9XP_004913801.1 LIM1_Lhx2 62..125 CDD:188853 32/64 (50%)
LIM2_Lhx2_Lhx9 130..188 CDD:188763 18/74 (24%)
Homeodomain 269..325 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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