DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and lmo1

DIOPT Version :9

Sequence 1:NP_001285799.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:XP_031755680.1 Gene:lmo1 / 100144284 XenbaseID:XB-GENE-6454235 Length:170 Species:Xenopus tropicalis


Alignment Length:139 Identity:56/139 - (40%)
Similarity:78/139 - (56%) Gaps:16/139 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 KVCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSG 140
            |.|.||..||.|||||.|||:|||..||||.||...|.||||:.:|:..||||::||..:||.:|
 Frog    36 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTG 100

  Fly   141 VCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGAS 205
            .|:.|.:.||..|:|.:|...                |:||.||:|..|......||::.:....
 Frog   101 NCAACSKLIPAFEMVMRARDN----------------VYHLDCFACQLCNQRFCVGDKFFLKNNM 149

  Fly   206 LVCEQDWHK 214
            ::|:.|:.:
 Frog   150 ILCQMDYEE 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_001285799.1 LIM1_LMO4 78..132 CDD:188772 32/53 (60%)
LIM 142..212 CDD:413332 17/69 (25%)
lmo1XP_031755680.1 LIM1_LMO1_LMO3 38..92 CDD:188774 32/53 (60%)
LIM2_LMO1_LMO3 102..156 CDD:188775 17/69 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 155 1.000 Inparanoid score I4203
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000888
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.050

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