DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4908 and AT3G28540

DIOPT Version :9

Sequence 1:NP_609358.1 Gene:CG4908 / 34360 FlyBaseID:FBgn0032195 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_189495.1 Gene:AT3G28540 / 822484 AraportID:AT3G28540 Length:510 Species:Arabidopsis thaliana


Alignment Length:393 Identity:110/393 - (27%)
Similarity:175/393 - (44%) Gaps:78/393 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 RDKSYQWLLKWITIRGARKTQHLSVETNFVQNDNGTIKTSYDFIPSIGKH-----LFQ-YKGNW- 113
            :.::|..:..:::.:...:.|.|....:         |.|...:.|:..|     :|| .|..| 
plant    67 KSQAYDLIRNYLSSKSTARAQRLKANES---------KNSKSLVLSLDNHEAVEDVFQGVKVVWS 122

  Fly   114 IQVERTREQQ--------TLDLHMGVPWETVTLTAFGNNKGIYFD-ILEEARQLALEATEGKTVL 169
            :.|.::.:|.        ||..|.... |.:|.|        |.| :|.|.:::.|:..|.|  |
plant   123 LSVWKSNDQADSSEKRYLTLSFHNRYR-EMITTT--------YLDHVLREGKEIGLKNRERK--L 176

  Fly   170 YTAMGAE----WR-------PFGHPRRRRPTGSVVLDRGTSQRIIADCQDFIKSSLWYTQRGIPY 223
            ||...::    ||       ||.||....   ::.:|....:.:..|...|.|...:|.:.|.|:
plant   177 YTNNSSQDYSAWREGRWSNVPFDHPATFE---TLAMDLEKKEGMKKDLIKFTKGKDYYRKVGKPW 238

  Fly   224 RRGYLLYGPPGCGKSSFITALAGELEYSVCLLNLSERGLTDD-RLNHLLNVAPEQSIILLEDIDA 287
            :|||||:||||.|||:.|:|:|..|||.|..|.|:.  :.|: .|..|:.....:||:::||||.
plant   239 KRGYLLFGPPGTGKSTMISAMANFLEYDVYDLELTT--VKDNSELKKLMLDTKGKSIVVIEDIDC 301

  Fly   288 AF-------------VSREATPQQKSAFDGLNR--------ITFSGLLNCLDGVGS--TEARIVF 329
            :.             ...|...::|.|...|.|        :|.|||||.:||:.|  :..:|:.
plant   302 SLDLTGQRKKKKEEDEDEEEEEKKKEAEKLLKRERGERESKVTLSGLLNAIDGLWSACSGEKIIV 366

  Fly   330 MTTNYIDRLDPALVRPGRIDLKEYIGYCTQYQLEEMFKNFFASSDTTKAEEFGKRVNSFGRSASP 394
            .||||:|:|||||:|.||:|....:.||.....:.:.||:..........|..:.|..  ...||
plant   367 FTTNYLDKLDPALIRRGRMDNHIEMSYCRFEAFKVLAKNYLEIESHDLFGEIKRLVEE--TDMSP 429

  Fly   395 AQI 397
            |.:
plant   430 ADV 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4908NP_609358.1 BCS1_N 23..192 CDD:214980 35/162 (22%)
RecA-like_BCS1 202..354 CDD:410918 65/175 (37%)
AT3G28540NP_189495.1 AAA_assoc 29..125 CDD:291061 11/66 (17%)
AAA 239..395 CDD:214640 60/157 (38%)
AAA 242..393 CDD:278434 57/152 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 98 1.000 Domainoid score I2399
eggNOG 1 0.900 - - E1_COG0465
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 128 1.000 Inparanoid score I1900
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D532729at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm2395
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23070
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X279
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.930

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