DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment CG4908 and nmd

DIOPT Version :9

Sequence 1:	NP_609358.1	Gene:	CG4908 / 34360	FlyBaseID:	FBgn0032195	Length:	431	Species:	Drosophila melanogaster
Sequence 2:	NP_001285801.1	Gene:	nmd / 44021	FlyBaseID:	FBgn0005322	Length:	369	Species:	Drosophila melanogaster

Alignment Length:	205	Identity:	58/205 - (28%)
Similarity:	86/205 - (41%)	Gaps:	46/205 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly   209 FIKSSLWYTQRGIPYRRGYLLYGPPGCGKSSFITALAGE-----LEYSVCLLNLSERGLTDDRLN 268
            |..|.||...:|:      ||:|||||||:....|.|.|     :...|.:|.....|.:....:
  Fly   123 FKHSKLWQAPKGV------LLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWYGESQKLTS 181

  Fly   269 HLLNVAP--EQSIILLEDIDAAFVSR-----EATPQQKSAF----DGLNRITFSGLLNCLDGVGS 322
            .:.::|.  |..||.:::||:...||     |||...|:.|    |||                |
  Fly   182 AVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEATAMMKTQFMMLWDGL----------------S 230

  Fly   323 TEAR---IVFMTTNYIDRLDPALVRPGRIDLKEYIGYCTQYQLEEMFKNFFASSDTTK---AEEF 381
            |.|.   ||...||....||.|:||  |:..:.:||..::.|.:::.|....|.:.::   ....
  Fly   231 TNANSTVIVMGATNRPQDLDKAIVR--RMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRL 293

  Fly   382 GKRVNSFGRS 391
            .|..|.|..|
  Fly   294 SKLTNGFSGS 303

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG4908	NP_609358.1	BCS1_N	23..192	CDD:214980
CG4908	NP_609358.1	RecA-like_BCS1	202..354	CDD:410918	49/163 (30%)
nmd	NP_001285801.1	AAA	132..266	CDD:214640	47/157 (30%)
nmd	NP_001285801.1	AAA	135..265	CDD:278434	45/153 (29%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910