DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4908 and ppgn-1

DIOPT Version :9

Sequence 1:NP_609358.1 Gene:CG4908 / 34360 FlyBaseID:FBgn0032195 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_500191.3 Gene:ppgn-1 / 177021 WormBaseID:WBGene00021425 Length:747 Species:Caenorhabditis elegans


Alignment Length:332 Identity:82/332 - (24%)
Similarity:125/332 - (37%) Gaps:76/332 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 IPSIGKHLFQYKG----------NWIQVERTREQQTLDLHMGVPWETVTL---------TAFGNN 144
            |||:.:...:.:.          :|.|:|..|.:..      ..|.|:.:         ..|...
 Worm   190 IPSVARFETEVRAAEAALGLPPEHWTQIEYRRSENV------AQWFTIIVLGGLLLGGFVLFRKF 248

  Fly   145 KGIYFDILEEARQLALEATEGKTVLYTAMGAEWRPFGHPRRRRPTGSVVLDRGTSQ-----RIIA 204
            ||.:     ....:....|:||..:......|                    |..|     :.:|
 Worm   249 KGSF-----NMSDMMSNMTKGKFTIIDPHSVE--------------------GKKQLKIKFKDVA 288

  Fly   205 DCQ----------DFIKSSLWYTQRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSVCLLNLSE 259
            .|.          |::|:...:|:.|....||.||.|||||||:....|||.|.......:|.||
 Worm   289 GCSEAKVEIREFVDYLKNPGRFTKLGAKLPRGALLTGPPGCGKTLLAKALAAESTVPFISMNGSE 353

  Fly   260 -----RGLTDDRLNHLLNVAPEQS--IILLEDIDAAFVSREATPQQKSAF---DGLNRITFSGLL 314
                 .||...|:..|...|..::  ||.:::|||....|.........|   .|....|.:.||
 Worm   354 FVEVIGGLGASRIRGLFKEARSRAPCIIYIDEIDAIGRKRSEGAGAGGGFGGGSGEEEQTLNQLL 418

  Fly   315 NCLDGVGSTEARIVFMTTNYIDRLDPALVRPGRIDLKEYIGYCTQYQLEEMFKNFFASSDTTKA- 378
            ..:||:||....:|..:||..|.||.||:||||.|....|...|..:.::||:.:........| 
 Worm   419 VEMDGMGSGNGVVVLASTNRADVLDKALLRPGRFDRHISIDLPTVLERKDMFELYMRKIKLDHAP 483

  Fly   379 EEFGKRV 385
            :|:.:|:
 Worm   484 QEYSQRL 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4908NP_609358.1 BCS1_N 23..192 CDD:214980 16/111 (14%)
RecA-like_BCS1 202..354 CDD:410918 57/171 (33%)
ppgn-1NP_500191.3 FtsH_ext 111..212 CDD:377663 3/21 (14%)
FtsH_fam 277..725 CDD:273520 65/214 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0465
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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