DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha6 and Psmb1

DIOPT Version :9

Sequence 1:NP_001285798.1 Gene:Prosalpha6 / 34359 FlyBaseID:FBgn0250843 Length:279 Species:Drosophila melanogaster
Sequence 2:NP_035315.1 Gene:Psmb1 / 19170 MGIID:104884 Length:240 Species:Mus musculus


Alignment Length:234 Identity:51/234 - (21%)
Similarity:89/234 - (38%) Gaps:42/234 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 QVEYAMEAVKLGTATVGLKNKDYAVLVALCKPTSELSDTQR---KIIPIDDHLGISIAGLTADAR 82
            |:.::..|...|| .:.:..:|::::.:..:.:...|...|   |...:.|...|..:|...|..
Mouse    26 QLRFSPYAFNGGT-VLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCL 89

  Fly    83 VLSRYLRSECLNYKHSYDTTYPVSRLITNLGNKMQTT--------TQRYDRR--PYGVGLLVAGY 137
            .|::.:.:....||||              .||..||        |..|.||  ||.|..::.|.
Mouse    90 TLTKIIEARLKMYKHS--------------NNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGL 140

  Fly   138 DERGP-HIYQVTPSATFFNCKANSIGSRSQSARTYLE-----KNLN--KFLDSSKDEIIRHGIRA 194
            ||.|. .:|...|..::......:.||.|...:..|:     ||:.  :.:..:.|..:|.....
Mouse   141 DEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDV 205

  Fly   195 ILGTLPTDEQGKDAGQYDITVAIVGKD--QPFTILSNKD 231
            .:.....|....||    :.:.||.|:  :..|:...||
Mouse   206 FISAAERDVYTGDA----LRICIVTKEGIREETVPLRKD 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha6NP_001285798.1 PRE1 4..231 CDD:223711 49/232 (21%)
proteasome_alpha_type_1 6..219 CDD:239718 46/218 (21%)
Psmb1NP_035315.1 PRE1 18..240 CDD:223711 49/232 (21%)
proteasome_beta_type_1 29..240 CDD:239726 48/229 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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