DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha6 and pbs-2

DIOPT Version :9

Sequence 1:NP_001285798.1 Gene:Prosalpha6 / 34359 FlyBaseID:FBgn0250843 Length:279 Species:Drosophila melanogaster
Sequence 2:NP_493271.1 Gene:pbs-2 / 173168 WormBaseID:WBGene00003948 Length:277 Species:Caenorhabditis elegans


Alignment Length:202 Identity:54/202 - (26%)
Similarity:87/202 - (43%) Gaps:24/202 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 AMEAVKLGTATVGLKNKDYAVLVALCKPTSE--LSDTQ-RKIIPIDDHLGISIAGLTAD----AR 82
            |.:....||..|.:..|...|:.|..:.|:.  ::|.. .|:..:.:.:....||..||    .:
 Worm    39 APKLTSTGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTK 103

  Fly    83 VLSRYLRSECLNYKHSYDTTYPVSRLITNLGNKMQTTTQRYDRRPY-GVGLLVAGYDERGPHIYQ 146
            :||..||...||       |...:|:||.|   .|.....::.:.| |..||:.|.|..|||:|.
 Worm   104 MLSGNLRLLELN-------TGRKARVITAL---RQAKQHLFNYQGYIGAYLLIGGVDPTGPHLYM 158

  Fly   147 VTPSATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEIIRHGIRAILGTLPTDEQGKDAGQY 211
            .:.:.|.......:.||.|.:|.|.||::..  :|.:|||..:...||    |.....|.:|...
 Worm   159 CSANGTTMAFPFTAQGSGSYAAITILERDFK--VDMTKDEAEKLVQRA----LEAGMHGDNASGN 217

  Fly   212 DITVAIV 218
            .:.:.|:
 Worm   218 SLNLVII 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha6NP_001285798.1 PRE1 4..231 CDD:223711 54/202 (27%)
proteasome_alpha_type_1 6..219 CDD:239718 54/202 (27%)
pbs-2NP_493271.1 PRE1 43..228 CDD:223711 53/198 (27%)
proteasome_beta_type_7 47..235 CDD:239732 52/194 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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