DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4901 and Dhx34

DIOPT Version :9

Sequence 1:NP_001334733.1 Gene:CG4901 / 34357 FlyBaseID:FBgn0032194 Length:694 Species:Drosophila melanogaster
Sequence 2:NP_001258381.1 Gene:Dhx34 / 684903 RGDID:1584452 Length:1143 Species:Rattus norvegicus


Alignment Length:552 Identity:199/552 - (36%)
Similarity:307/552 - (55%) Gaps:31/552 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 IEQQQKSLPVFNCRHRILKELEANDTVLIMSETGSGKTTQIPQFLLLAGYAKNGMIGITQPRRVA 125
            :::::.:||:....:|||:.|:.:..|::..:||.||:||:||:||.||::.   :..|||||:|
  Rat   156 LQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSH---VACTQPRRIA 217

  Fly   126 AITVARRVAQELNGTIGDTVGYTVRFEDVTSRATKIRFLTDGVLLRESIKDRLLLKYSVIILDEA 190
            .|::|:||..|.....|..|||.:|||...|.||||.|||.|:|||:...:..|.:|.|:|:||.
  Rat   218 CISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQCEPRLPQYQVLIVDEV 282

  Fly   191 HERTVNADLLFGIVKDAQKERRKQKLANLKVVVTSATMDIDHFGNYF-NCKGMYLEGRTYPVRVM 254
            |||.::.|.|.|:::....:|     .:|||::.|||::|..|.:|| :...:.:.||.:|:.|:
  Rat   283 HERHLHNDFLLGVLQRLLPQR-----PDLKVILMSATINISLFSSYFSHAPVVQVPGRLFPITVV 342

  Fly   255 HTKEEHEDYI--------HTVLVTLFHIHRTTP--KNHDVLIFLTGQEEIESLAQQIRQLAKIDT 309
            :..:|.|...        ...|..|..|....|  :..|:|:||:|..||.:    :...|:...
  Rat   343 YQPQEAEQSASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGMAEIST----VLDAAQAYA 403

  Fly   310 TGTTDLRVFTLYAQLSQGKQLECFVPTPANVRKVILATNIAETSITIPGIRCVIDCGFVKEKSFN 374
            |.|....|..|::.||...|.:.|...||.|||.||:|||||||:||.|||.|:|.|.|||.|::
  Rat   404 TLTQRWVVLPLHSALSVADQDKVFDVAPAGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYD 468

  Fly   375 TVDGLDVLKSVRISKAQAWQRAGRAGRDADGTCYRAYTKAEMDSFADATQPEILRTNPTSMVLQL 439
            ....|..|:...||:|.|.||.|||||...|.|||.|.:::.|:||....|||.|....::|||:
  Rat   469 PQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQM 533

  Fly   440 LALDI-DCNNFDFLDPPLEDGLRSAYKSLDALGAIKTGDDSYITPLGRQMVQYPLDPKYSKLLLT 503
            .::.: |...|.|::||....:.:|...|...||:.:.:  .:||:|..:.|.|:|....|:::.
  Rat   534 KSMSVGDPRTFPFIEPPPAASVETAILYLQDQGALDSSE--ALTPIGSLLAQLPVDVVIGKMMIL 596

  Fly   504 ASSFGCMEEILSLVSVLSSDHVFVSNSEKNEMAALAHAKFQSKHGDHLTLLNVFNGF--LKSEK- 565
            .|.|...|.:|::.:.||....|..:::.|...|.|....:|..||..||.||||.:  :|||: 
  Rat   597 GSMFSLAEPVLTIAAALSVQSPFTRSAQSNLDCATARRPLESDQGDPFTLFNVFNAWVQVKSERS 661

  Fly   566 --PKMWCHDNYLNLRSLTYARNVRRQLREISE 595
              .:.||....:....|....|:|||.:|:.|
  Rat   662 GNSRKWCRRRGVEEHRLYEMANLRRQFKELLE 693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4901NP_001334733.1 None
Dhx34NP_001258381.1 HrpA 155..>687 CDD:224557 195/544 (36%)
OB_NTP_bind 798..909 CDD:400182
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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