DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4901 and prp43

DIOPT Version :9

Sequence 1:NP_001334733.1 Gene:CG4901 / 34357 FlyBaseID:FBgn0032194 Length:694 Species:Drosophila melanogaster
Sequence 2:NP_595937.1 Gene:prp43 / 2540057 PomBaseID:SPBC16H5.10c Length:735 Species:Schizosaccharomyces pombe


Alignment Length:701 Identity:266/701 - (37%)
Similarity:398/701 - (56%) Gaps:64/701 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 KKPHVAQI------KQTIAPILLTSKRTSIEQQQKS--------------------------LPV 70
            |.|::|.:      ::.::...||.:.|::.|..|:                          |||
pombe    13 KNPYLAHLNNGDDSEEVVSSKGLTRRATTVAQAAKAEEGPNNFFNDKPFSQNYFKILETRRELPV 77

  Fly    71 FNCRHRILKELEANDTVLIMSETGSGKTTQIPQFLLL--AGYAKNGMIGITQPRRVAAITVARRV 133
            :..|...||....|..::.:.|||||||||||||:|.  ..:..|..|..||||||||::||:||
pombe    78 YQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYDELPHLTNTQIACTQPRRVAAMSVAKRV 142

  Fly   134 AQELNGTIGDTVGYTVRFEDVTSRATKIRFLTDGVLLRESIKDRLLLKYSVIILDEAHERTVNAD 198
            |.|::..:|:.|||.:||||.:...|.::::|||:||||::.|.:|.:||.||||||||||:..|
pombe   143 ADEMDVDLGEEVGYNIRFEDCSGPNTLLKYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLATD 207

  Fly   199 LLFGIVKDAQKERRKQKLANLKVVVTSATMDIDHFGNY-FNCKGMYLEGRTYPVRVMHTKEEHED 262
            :|.|::|     |...:..:||::|.|||:|...|..| |:...:.:.||||||.:.:|:|...|
pombe   208 ILMGLMK-----RLATRRPDLKIIVMSATLDAKKFQKYFFDAPLLAVPGRTYPVEIYYTQEPERD 267

  Fly   263 YIHTVLVTLFHIHRTTPKNHDVLIFLTGQEEIESLAQQIR----QLAKIDTTGTTDLRVFTLYAQ 323
            |:...|.|:..|| ......|:|:||||:||||...::|.    .|.:....|  .|:|:.||..
pombe   268 YLEAALRTVLQIH-VEEGPGDILVFLTGEEEIEDACRKITLEADDLVREGAAG--PLKVYPLYGS 329

  Fly   324 LSQGKQLECFVPTPANV-----RKVILATNIAETSITIPGIRCVIDCGFVKEKSFNTVDGLDVLK 383
            |...:|...|.|||.:.     |||:::|||||||:||.||..|:|.||.|:|.:|....::.|.
pombe   330 LPPNQQQRIFEPTPEDTKSGYGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLL 394

  Fly   384 SVRISKAQAWQRAGRAGRDADGTCYRAYT-KAEMDSFADATQPEILRTNPTSMVLQLLALDI-DC 446
            ...||||.|.||||||||...|.|:|.|| :|......:.|.|||||:|.:|.||:|..|.| |.
pombe   395 VSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFRKELIEQTYPEILRSNLSSTVLELKKLGIDDL 459

  Fly   447 NNFDFLDPPLEDGLRSAYKSLDALGAIKTGDDSYITPLGRQMVQYPLDPKYSKLLLTASSFGCME 511
            .:||::|||..:.:..|.:.|:.|..:  .|:..:|||||:..::||||..:.:|:.:..|.|..
pombe   460 VHFDYMDPPAPETMMRALEELNYLNCL--DDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFYCSN 522

  Fly   512 EILSLVSVLSSDHVFVSNSEKNEMAALAHAKFQSKHGDHLTLLNVFNGFLKSEKPKMWCHDNYLN 576
            |:|||.::||..:|||..:...::|.....:|....|||||||||::.:...|....||.:::|:
pombe   523 EVLSLTALLSVPNVFVRPNSARKLADEMRQQFTHPDGDHLTLLNVYHAYKSGEGTADWCWNHFLS 587

  Fly   577 LRSLTYARNVRRQLREISEHLHLALNSS--DDIEM---LKKCILNGFFENIAVLQRDG-FYITAS 635
            .|:|..|.|||:|||...|...:.|.|:  ||...   :::.:::|||..:|....:| .|:|..
pombe   588 HRALISADNVRKQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMK 652

  Fly   636 GNIRSKIHPSSVLHGKYKPSYILFTEIVQTEQTFLRQVTEISIEWIKEVVP 686
            .|....:|||..|  ...|.::::.|.|.|.::|:|.||.|..||:.|:.|
pombe   653 DNQVVSLHPSCGL--SVTPEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAP 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4901NP_001334733.1 None
prp43NP_595937.1 DEXDc 80..258 CDD:214692 85/182 (47%)
DEXDc 92..232 CDD:238005 70/144 (49%)
HELICc 257..421 CDD:238034 68/166 (41%)
HA2 482..565 CDD:214852 30/84 (36%)
OB_NTP_bind 599..703 CDD:285018 33/105 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53574
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100085
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.720

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