DRSC/TRiP Functional Genomics Resources

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Protein Alignment ath and smgl-2

DIOPT Version :10

Sequence 1:NP_609356.2 Gene:ath / 34357 FlyBaseID:FBgn0032194 Length:694 Species:Drosophila melanogaster
Sequence 2:NP_001294374.1 Gene:smgl-2 / 177135 WormBaseID:WBGene00021365 Length:1089 Species:Caenorhabditis elegans


Alignment Length:573 Identity:191/573 - (33%)
Similarity:298/573 - (52%) Gaps:41/573 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 KRTSIEQQQKSLPVFNCRHRILKELEANDTVLIMSETGSGKTTQIPQFLLLAGYAKNGMIGITQP 121
            |...:.:.||.||:......|::.|:.|..:::..:||.||:||:||:||.||:..   :..|||
 Worm   133 KLQKLRKLQKELPIAERAGEIVELLKTNQVLIVAGDTGCGKSTQVPQYLLKAGFTG---VACTQP 194

  Fly   122 RRVAAITVARRVAQELNGTIGDTVGYTVRFEDVTSRATKIRFLTDGVLLRESIKDRLLLKYSVII 186
            ||:|...:|||||.|.....|..|.:.:|||...|:.||:.|||:|:|||:..||.||.||:|||
 Worm   195 RRIACTALARRVAYETLNQYGSEVAFQIRFETTKSQKTKLLFLTEGLLLRQMEKDSLLEKYNVII 259

  Fly   187 LDEAHERTVNADLLFGIVKDAQKERRKQKLANLKVVVTSATMDIDHFGNYF-NCKGMYLEGRTYP 250
            |||.|||.:.:|||.|:::|...:|     .:||:::.|||:::|.|..|| ....:.:.||.:|
 Worm   260 LDEVHERHLTSDLLIGLLRDLCTKR-----DDLKLILMSATINLDLFKGYFEGAPVVQVPGRLFP 319

  Fly   251 VRV----------MHTKEEHEDYIHTVLVTLFHIHRTTPKNH--DVLIFLTGQEEIESLAQQIRQ 303
            :.|          ...|:.|:......|..|..|.:..|...  |.||||.|..||..:|:.::.
 Worm   320 IDVRWHPIKQFIDQSDKKTHKIDPEPYLKILELIDKQFPSTQRGDALIFLNGVAEISMVAEHLKN 384

  Fly   304 LAKIDTTGTTDLRVFTLYAQLSQGKQLECFVPTPANVRKVILATNIAETSITIPGIRCVIDCGFV 368
            .|::    |....:..|::.||..:|.:.|...|..:||.||:||:||||:||.|||.|||.|.|
 Worm   385 YAEL----TNGWIILMLHSTLSVEEQDKVFDQAPVGIRKCILSTNVAETSVTIDGIRFVIDSGKV 445

  Fly   369 KEKSFNTVDGLDVLKSVRISKAQAWQRAGRAGRDADGTCYRAYTKAEMDSFADATQPEILRTNPT 433
            .........|...|....:|||.|.||.|||||...|.|||.|::.:.:...|.|..||.|.:..
 Worm   446 NLIKHEPGTGTQKLTEFWVSKASANQRKGRAGRTGPGICYRLYSQEQFEKMDDFTVSEINRVSLQ 510

  Fly   434 SMVLQLLALD--IDCNNFDFLDPPLEDGLRSAYKSLDALGAIKT--GDDSYITPLGRQMVQYPLD 494
            .|.|::::|:  :|...|.|::.|.||.|....:.|.....:::  ||...:|.||..:.:.|::
 Worm   511 EMALKMISLNLGLDPRTFPFIEKPSEDVLNEGLEVLKFQRVLRSDRGDILTLTALGNMVSKLPVE 575

  Fly   495 PKYSKLLLTASSFGC----MEEILSLVSVLSSDHVFVSNSEKNEMAALAHAKFQSKHGDHLTLLN 555
            ...:|:|:    :||    :|.:|::.:.||....|.:.|.:........|...|..||..||::
 Worm   576 VPIAKMLV----YGCVVDELEVMLTVAAGLSVQSPFTNRSYRELEIVERRASLTSPLGDPFTLIS 636

  Fly   556 VFNGFLKSE----KPKMWCHDNYLNLRSLTYARNVRRQLREISEHLHLALNSS 604
            :|..::..:    ..:.|..:|.::...|.....:|.|.|:|.|...|...:|
 Worm   637 IFREWVLQKAFEGTARRWTMENGIDEHRLYEISKLRAQYRQILEDAGLVEKAS 689

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
athNP_609356.2 HrpA 67..>686 CDD:441249 188/563 (33%)
smgl-2NP_001294374.1 HrpA 143..>694 CDD:441249 188/563 (33%)
OB_NTP_bind 788..888 CDD:400182
Blue background indicates that the domain is not in the aligned region.

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