DRSC/TRiP Functional Genomics Resources

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Protein Alignment ath and ythc-2

DIOPT Version :10

Sequence 1:NP_609356.2 Gene:ath / 34357 FlyBaseID:FBgn0032194 Length:694 Species:Drosophila melanogaster
Sequence 2:NP_492260.1 Gene:ythc-2 / 172615 WormBaseID:WBGene00009922 Length:1425 Species:Caenorhabditis elegans


Alignment Length:1003 Identity:234/1003 - (23%)
Similarity:373/1003 - (37%) Gaps:365/1003 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SRNDAVGPSPVKFSFK--RKYDAMANSPILEKKP-----------------------HVAQIKQT 48
            |::..|...|:..||:  :|.     |..:||.|                       |::. :..
 Worm   105 SKSTLVATEPITPSFECLQKL-----SKFVEKHPITREEMDEFLTETQTKQMHTTKGHISD-RMV 163

  Fly    49 IAPILLTSKRTSIEQQQKSLPVFNCRHRILKELEANDTVLIMSETGSGKTTQIPQFLLLAGYAKN 113
            |.|....||  .:::.:.|||......::||.:.:.:.|:|...||.|||||:|||:|...:..|
 Worm   164 IPPKSKCSK--ELQKVRNSLPASKYCDQVLKSISSCNVVIISGGTGCGKTTQVPQFILDEAHENN 226

  Fly   114 G--MIGITQPRRVAAITVARRVAQELNGTIGDTVGYTVRFEDVTSRATKIRFLTDGVLLRESIKD 176
            .  .:.:|||||:|||::|.|||:|....||.||||.||.:...|..|.:.:.|.|||||....|
 Worm   227 KHVRVMVTQPRRIAAISIAERVARERGEPIGRTVGYQVRLDSRRSDDTVLTYCTTGVLLRMLTSD 291

  Fly   177 RLLLKYSVIILDEAHERTVNADLLFGIVKDAQKERRKQKLANLKVVVTSATMD--IDHFGNYFNC 239
            .:....:.|::||.|||.:|.|.|...:::..|.|     .:|||::.|||::  :..|.|||..
 Worm   292 PVASGITHIVMDEIHEREINTDYLLIALRECLKMR-----PDLKVILMSATIEGNMQLFSNYFEN 351

  Fly   240 KGM---YLEGRTYPVRVM------------------------HTKEEHEDYIHTV---------- 267
            ..|   .:|.|.:.|:|.                        :.:|:.:|.|..|          
 Worm   352 HSMDVIRIESRAFDVKVFYLDQILAMTGYQPPESKAFFSTAEYEEEDWKDEIEAVEREEKDKAKQ 416

  Fly   268 ------LVTL------------------------------------------------------- 271
                  |.||                                                       
 Worm   417 RAADSSLSTLSKPVTKMAANTKRNSPIEEREWTSGPCSTPDGDIIDERAMRQYMNIIGNPDIRPV 481

  Fly   272 --FHIHRTTPKN---HDVLIFLTGQEEIESLAQQIRQ---------------------------- 303
              .....|||.:   :||.......:..::|.||.|:                            
 Worm   482 ITVEFRPTTPNSVFINDVKYTTNPNQSAQALLQQKRERCLMPRGPLTFTCENPASTTKSPPSPTP 546

  Fly   304 -------LAK-------------------------------------------IDTTGTTDLR-- 316
                   |||                                           :|.|..:.||  
 Worm   547 TLGISSGLAKFTPFGGFGEKQRISTLLEKKFKEELKTALPDRTVYYHPQMNDVVDKTDFSKLRFG 611

  Fly   317 ----------------------------------------------------------------- 316
                                                                             
 Worm   612 EKYNLFYGSSSNNSVDYVLLDQVIQYLADSPVFGTILVFLPGYEDIQQMLKAIDCWKNSLKNMKN 676

  Fly   317 --VFTLYAQLSQGKQLECFVPTPANVRKVILATNIAETSITIPGIRCVIDCGFVKEKSFNTVDGL 379
              |..|::|::.....:.|...|.:.||:||||||||.||||..:..|:|.|.||||||:....|
 Worm   677 VIVLPLHSQMTSINHGDIFKSVPKDTRKIILATNIAEASITIEDVIFVVDTGKVKEKSFDHEAKL 741

  Fly   380 DVLKSVRISKAQAWQRAGRAGRDADGTCYRAYTKAEMDSFADATQPEILRTNPTSMVL--QLLA- 441
            ..|....|:::.|.||:|||||.|:|.|.|.||:.|.:|..:....|:.|.....:.|  :|.| 
 Worm   742 STLTVKPIARSNADQRSGRAGRVANGYCIRLYTEQEYNSMPETQIAEMKRAAIYDVTLHAKLFAP 806

  Fly   442 --LDIDCNNFDFL----DPPLEDGLRSAYKSLDALGAIKT------------------------- 475
              |.|.    :||    :||.::.:..|...|:.:||..|                         
 Worm   807 KTLKIS----EFLSLAPEPPEKESILQAITFLEQIGAFYTPIKIYDNSGNEEGLKNDEEAENSEN 867

  Fly   476 GDDSYITPLGRQMVQYPLDPKYSKLLLTASSFGCMEEILSLVSVLSS--DHVFVSNSEKNEMAAL 538
            .:|..:|.|||.|.:.||||:.|::||...:..|:..|::||::|:|  .:|...:.:::..:.:
 Worm   868 PEDPELTDLGRLMARLPLDPQLSRMLLFGLALKCLTPIVNLVALLASREPYVLALSEDRDLQSKM 932

  Fly   539 AHAKFQSKHGDHLTLLNVFNGFL--KSEKPKMWCHDNYLNLRSLTYARNVRRQ-LREI--SEHLH 598
            .....|....|||..:.:.|.|.  .:.:...:|.|::||..::...:..||| |||:  ::.::
 Worm   933 KFEMAQQDLSDHLLYIRLCNEFCSKNNSQQNQFCRDHFLNFSTMRMVQGTRRQLLRELVRAKLIN 997

  Fly   599 LALNSSDDIEMLKKCILNGFFENIAVLQ---RDGFY----ITASGNIRSKI----------HPSS 646
            ::.| .|.:.:|.....|.|.:...::|   ..|.|    ::||.:...|:          ||||
 Worm   998 ISPN-RDVLTVLTDHHFNQFSQCWPMIQAVIAAGCYPFIGVSASESNLKKVQTFNDKPAFLHPSS 1061

  Fly   647 VLH------GKYKPS----YILFTEIVQ 664
            ::.      ||.:.|    |:.|.|:.|
 Worm  1062 MVKKQIVKMGKSEKSPRVEYVAFQEMCQ 1089

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
athNP_609356.2 HrpA 67..>686 CDD:441249 219/920 (24%)
ythc-2NP_492260.1 R3H 21..100 CDD:214647
DEXHc_RHA-like 198..359 CDD:438707 66/165 (40%)
HrpA <630..>988 CDD:441249 96/361 (27%)
OB_NTP_bind 1023..1116 CDD:400182 17/67 (25%)
Blue background indicates that the domain is not in the aligned region.

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