DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4901 and dhx16

DIOPT Version :9

Sequence 1:NP_001334733.1 Gene:CG4901 / 34357 FlyBaseID:FBgn0032194 Length:694 Species:Drosophila melanogaster
Sequence 2:NP_001116881.3 Gene:dhx16 / 100127179 XenbaseID:XB-GENE-480525 Length:1033 Species:Xenopus tropicalis


Alignment Length:698 Identity:287/698 - (41%)
Similarity:432/698 - (61%) Gaps:39/698 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VGPSPVKFSF-------KRKYDAMANSPILEKKPHVAQIKQTI------APILLTS--KRTSIEQ 63
            :|.:.::|..       |::||.:.....:.:....||:|.||      :.:|..|  |:.||::
 Frog   322 IGAASLRFGAKDAHDHGKKEYDFVMEENEVIQFVSSAQMKGTIDKEEENSEVLSESERKKLSIQE 386

  Fly    64 QQKSLPVFNCRHRILKELEANDTVLIMSETGSGKTTQIPQFLLLAGYAKNGM-IGITQPRRVAAI 127
            .::|||||..|..:|:.:..:..::|..||||||||||||:|...||.|||: ||.||||||||:
 Frog   387 VRRSLPVFPYRSDLLQAISDHQILIIEGETGSGKTTQIPQYLHEHGYTKNGLKIGCTQPRRVAAM 451

  Fly   128 TVARRVAQELNGTIGDTVGYTVRFEDVTSRATKIRFLTDGVLLRESIKDRLLLKYSVIILDEAHE 192
            :|:.||:||:...:|:.|||::||||.||..|.::::|||:||||.:.:..|..|||||:|||||
 Frog   452 SVSARVSQEMGVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHE 516

  Fly   193 RTVNADLLFGIVKDAQKERRKQKLANLKVVVTSATMDIDHFGNYFNCKGMY-LEGRTYPVRVMHT 256
            ||::.|:|||::||..:.|:     :|||:|.|||::.:.|.::|:...:: :.||.|||.:.:|
 Frog   517 RTLHTDVLFGLIKDIARFRQ-----DLKVLVASATLNTERFSSFFDDAPVFRIPGRRYPVDIYYT 576

  Fly   257 KEEHEDYIHTVLVTLFHIHRTTPKNHDVLIFLTGQEEIESLAQQIRQLAKIDTTGTTDLRVFTLY 321
            |....||:...:|::..||.|.|.. |:|:|||||||||:..:.:::..:...:...::.|..:|
 Frog   577 KAPEADYLEACVVSVLQIHVTQPPG-DILVFLTGQEEIETCCEMLQERCRRLGSKIAEMLVLPIY 640

  Fly   322 AQLSQGKQLECFVPTPANVRKVILATNIAETSITIPGIRCVIDCGFVKEKSFNTVDGLDVLKSVR 386
            |.|....|.:.|.|||...|||::||||||||:||.||..|||.||.|:||:|...|::.|....
 Frog   641 ANLPSDMQAKIFEPTPPGARKVVIATNIAETSLTIDGIIYVIDPGFCKQKSYNARSGMESLIVTP 705

  Fly   387 ISKAQAWQRAGRAGRDADGTCYRAYT----KAEMDSFADATQPEILRTNPTSMVLQLLALDI-DC 446
            .|||.|.||||||||.|.|.|:|.||    |.||:   |.|.|||.|||..::||.|.:|.| |.
 Frog   706 CSKASANQRAGRAGRVAAGKCFRLYTAWAYKNEME---DTTVPEIQRTNLGNVVLLLKSLGINDL 767

  Fly   447 NNFDFLDPPLEDGLRSAYKSLDALGAIK-TGDDSYITPLGRQMVQYPLDPKYSKLLLTASSFGCM 510
            .:|||:|||..:.|..|.:.|.||||:. .|:   :|.|||:|.:.|:||..||::|.:..:||.
 Frog   768 IHFDFMDPPPHETLVLALEQLYALGALNHLGE---LTKLGRRMAELPVDPMLSKIILASEQYGCS 829

  Fly   511 EEILSLVSVLS-SDHVFVSNSEKNEMAALAHAKFQSKHGDHLTLLNVFNGFLKSEKPKMWCHDNY 574
            |:||::.::|| ::.:|....:|...|..|.|.|....|||:.||||:..:::|.....||::|:
 Frog   830 EQILTIAAMLSVNNTIFYRPKDKLVHADTARANFTVPGGDHMVLLNVYTQWVESGHSLQWCYENF 894

  Fly   575 LNLRSLTYARNVRRQLREISEHLHLALNSSD-DIEMLKKCILNGFFENIAVLQRDGFYITASGNI 638
            :..|||..||:||.||..:...:.:.|.|.: |...::|.|..|:|.:.|.|.|.| |.|.....
 Frog   895 IQARSLRRARDVREQLEGLMGRIEIELTSCEGDSIPVRKAITAGYFYHTARLTRSG-YKTVKQQQ 958

  Fly   639 RSKIHPSSVLHGKYKPSYILFTEIVQTEQTFLRQVTEISIEWIKEVVP 686
            ...|||:|.|| :.:|.::::.|:|.|.:.::||:.||...|:.||.|
 Frog   959 AVYIHPNSSLH-EEQPRWVIYHELVFTTKEYMRQIIEIDSTWLLEVAP 1005

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4901NP_001334733.1 None
dhx16NP_001116881.3 PTZ00121 <88..381 CDD:173412 12/58 (21%)
HrpA 356..1005 CDD:224557 281/662 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D354219at2759
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.