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Protein Alignment CG5731 and Naga

DIOPT Version :9

Sequence 1:	NP_609354.1	Gene:	CG5731 / 34355	FlyBaseID:	FBgn0032192	Length:	413	Species:	Drosophila melanogaster
Sequence 2:	NP_001012120.1	Gene:	Naga / 315165	RGDID:	1306025	Length:	415	Species:	Rattus norvegicus

Alignment Length:	398	Identity:	203/398 - (51%)
Similarity:	264/398 - (66%)	Gaps:	16/398 - (4%)

- Green bases have known domain annotations that are detailed below.

  Fly    18 LDNGLAKTPPMGWLSWERFRCNTDCVNDPDNCISEQLFQTMTDIVVADGYASVGYEYINIDDCWL 82
            |:|||.:|||||||:|||||||.:|..||.|||||:||..|.|.:..||:..:||.|:||||||:
  Rat    18 LENGLLRTPPMGWLAWERFRCNINCEEDPKNCISERLFMEMADRLAQDGWRDLGYVYLNIDDCWI 82

  Fly    83 EKHRSHDGKLVADRKRFPNGIKALSDYIHSRGLKFGIYEDYGNYTCAGYPG-IIGYEEKDALQFA 146
             ..|...|:|:.|.||||:||..|:||.||.|||.|||||.|..||.|||| .:...|.||..||
  Rat    83 -GGRDATGRLIPDPKRFPHGIAFLADYAHSLGLKLGIYEDMGKMTCMGYPGTTLDKVELDAATFA 146

  Fly   147 DWNVDYVKLDGCYALPYDMDHGYSTFGRLLNSTGKSMVYSCSWPVYQIYAGIQP--NYSAIQTHC 209
            :|.||.:||||||:.|.:...||......||:||:.:.:|||||.|:  .|:.|  ||:.:...|
  Rat   147 EWKVDMLKLDGCYSTPKERAEGYPKMAAALNATGRPIAFSCSWPAYE--GGLPPKVNYTEVAGTC 209

  Fly   210 NLWRNYDDIQDSWASVENIIDYYGNNQDVIAPNAGPGHWNDPDMLIIGNFGLSYEQAKTQFAIWS 274
            ||||||.||||||.||.:|:|::..:||::.|.:|||||||||||:|||||||:::::.|.|:|:
  Rat   210 NLWRNYKDIQDSWKSVLSILDWFVKHQDILQPVSGPGHWNDPDMLLIGNFGLSFDESRAQMALWT 274

  Fly   275 ILAAPLLMSVDLRTIRPQFKHILQNRKIIAVDQDPLGIQGRRIYKHKG-IEIWSRPIGPLYQNFY 338
            :|||||.||.|||||.||...||||..:|.::|||||||||.|:|.|. ||::.|.:..     .
  Rat   275 VLAAPLFMSTDLRTISPQNIDILQNPLLIKINQDPLGIQGRLIFKSKSHIEVFKRNLSD-----D 334

  Fly   339 SYAIAFVNRRTDGTPSDISVTLKELGLINFSGYRVEDLYENVDYGVLYPNTKIKVKVNPSGVVML 403
            :.|:.|.:|||| .|.....:|.||.....|.|..::::.......|:|.|...|.:|||||||.
  Rat   335 ASALVFFSRRTD-MPYHFHCSLLELNYPKGSVYEGQNVFTGDIISGLHPETNFTVIINPSGVVMW 398

  Fly   404 KGEVQYPV 411
               ..|||
  Rat   399 ---YLYPV 403

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.