DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx17 and Snx27

DIOPT Version :9

Sequence 1:NP_609353.1 Gene:Snx17 / 34354 FlyBaseID:FBgn0032191 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_001103621.1 Gene:Snx27 / 260323 RGDID:628705 Length:539 Species:Rattus norvegicus


Alignment Length:423 Identity:95/423 - (22%)
Similarity:160/423 - (37%) Gaps:87/423 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 PDTQELGSS--------------PTY----------TAYNIHINGIHHCVLRYKQLHSLNDQLRR 51
            |....||.|              |||          ..||:::.|...|..||::...|:..|:|
  Rat   143 PSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKR 207

  Fly    52 HCVGVPLPPFPPKRLLPLTNGQLEARRSSLEQYLQAVGQDNRLARSAHLQQFLQRA--------- 107
            .......|..|.|....|:..||:|||..||:||:.|.....:..|..:|:||..:         
  Rat   208 EFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSD 272

  Fly   108 -QLDTALAEGQVATDCEEQQLEVQVYTNPAGERILVNCSVQQNASALLKSVCRELQLPDELVRFF 171
             :|..||.:|...|        |:|..|...:::             .:::..::.:....|.:|
  Rat   273 VELRVALPDGATVT--------VRVKKNSTTDQV-------------YQAIAAKVGMDSTTVNYF 316

  Fly   172 CLFLVRRQRKSGELHLVRRLMDFESPYITRLHVQ--------PCELLLRTCYWDSSRDAKLTGSK 228
            .||.|...      ..||:|...|.|:  :|:||        .| |.:|...:.:..:..|..:.
  Rat   317 ALFEVINH------SFVRKLAPNEFPH--KLYVQNYTSAVPGTC-LTIRKWLFTTEEEVLLNDND 372

  Fly   229 VALNLLYNQTVADVNREWVVICTPGEGRQLNSLQMQGRAREYMDLVRQLPSYGCLQFDEAQVD-Y 292
            :|:...::|.|.||.:.:  |....:..||..|..|.:...|::::|....|..:.|.....| .
  Rat   373 LAVTYFFHQAVDDVKKGY--IKAEEKSYQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSR 435

  Fly   293 PEPDTMALISIGNKELALRTARG-VKIYETKFRVTRMRSWRVSVTHITLESRLEPTHLQLAFEYL 356
            .:...:..|||.:.:|...|..| ::.....|....|:.|..           :...:...|||.
  Rat   436 RKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDT-----------DEEGMAFCFEYA 489

  Fly   357 IGKQTLRWITINSDQAMLMSVCLQAMVDELLQR 389
            .|::..||:.|.:.....|..|.:.:..||..|
  Rat   490 RGEKKPRWVKIFTPYFNYMHECFERVFCELKWR 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx17NP_609353.1 PX_SNX17_31 7..108 CDD:132795 34/130 (26%)
FERM-like_C_SNX17 280..391 CDD:270145 24/112 (21%)
Snx27NP_001103621.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..40
PDZ_signaling 39..131 CDD:238492
PX_SNX27 158..263 CDD:132796 30/104 (29%)
FERM_F1_SNX27 271..363 CDD:340475 24/121 (20%)
FERM-like region F1. /evidence=ECO:0000250 271..360 24/118 (20%)
FERM-like region F2. /evidence=ECO:0000250 371..419 12/49 (24%)
FERM-like_C_SNX27 423..524 CDD:270146 23/111 (21%)
FERM-like region F3. /evidence=ECO:0000250 423..523 23/111 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3784
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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