DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snx17 and snx-17

DIOPT Version :9

Sequence 1:NP_609353.1 Gene:Snx17 / 34354 FlyBaseID:FBgn0032191 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_001076762.1 Gene:snx-17 / 184624 WormBaseID:WBGene00008927 Length:540 Species:Caenorhabditis elegans


Alignment Length:530 Identity:130/530 - (24%)
Similarity:217/530 - (40%) Gaps:94/530 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SSRMHFSIPDTQEL----GSSPTYTAYNIHINGIHHCVLRYKQLHS----LNDQLRRHCVGVPLP 59
            |..:|..:|||:.|    .....||||||||||.:|..:|:..|:.    :..:..:...|   |
 Worm    63 SDMIHVDVPDTKTLVERSDGITKYTAYNIHINGWYHGSVRFSHLYEFAELIKQKFSQRYKG---P 124

  Fly    60 PFPPKRLLPLTNGQLEARRSSLEQYLQAVGQDNRLARSAHLQQFLQRAQLDTALAEGQVATDCEE 124
            .||.|:|..|....::.||..:.:|.||:.|...:||...:::.|...|:|:..|..|..|    
 Worm   125 EFPAKKLFKLDPKAIDERRQKITKYFQALVQHPEVARHYLVEKKLLGFQIDSFRATSQYVT---- 185

  Fly   125 QQLEVQVYTNPAGERILVNCSVQQNASALLKSVCREL--QLPDELVRFFCLFLVRRQRKSGELH- 186
                :.|:.. .||:..:.|.|..:...::|.:|.:|  :..|:.:..|.||:.:.:..:...: 
 Worm   186 ----LDVFLG-NGEKTTIKCLVSDSTLEIMKIICEKLGFKNKDQFIYHFGLFMAKGRDPTNACYS 245

  Fly   187 ---------LVRRLMDFESPYIT------------RLHVQPCELLLRTCYWDSSRDAKLTGSKVA 230
                     |.|.|.:||:|:::            ..|.    |.||...|||..:..|......
 Worm   246 VTTENFNPLLTRFLRNFEAPFVSLSTANQKYNENGHYHF----LCLRKLIWDSRVEEPLLDDGNF 306

  Fly   231 LNLLYNQTVADVNREWVVICTPGEGRQLNSLQMQGRAREYMDLVRQLPSYGCLQFDEAQVDYPEP 295
            :.|||.|.:.|.....:.........:|.|...:..::.::....||.:|..........|||:|
 Worm   307 VELLYKQAMQDYKNGHMDPVKEDLDSKLKSCMARNDSKMFLRTCHQLSTYSYEIMSPCSCDYPKP 371

  Fly   296 DTMALISIGNKELALRTARGV-KIYETKFRVTRMRSWRVSVTHITLESRLEPTHLQLAFEYLIGK 359
            .|...|..|.:::.:.|.... |...:.||.||:|.||  :|.:.       ..:...||||:.|
 Worm   372 GTPCEIKFGRRQIIMTTRDETGKPKPSIFRATRIRVWR--ITQVM-------DKISFQFEYLMAK 427

  Fly   360 QTLRWITINSDQAMLMSVCLQAMVDELLQRGAGSGKDQNSDEEQEQNAVTSSSSTPSSTCSTSTW 424
            .|..|||:::||::|||:.||::..|:|               .|.|.:|..........|...:
 Worm   428 DTFEWITLDTDQSILMSLLLQSIGSEIL---------------YEHNNMTIEQQVMKEKHSKGNY 477

  Fly   425 ASSTCSTSTAPTTPPVRFLS--EDSAP-------RSKPRLTTSRTFGAVFFRNDVVDNGARVANG 480
            ...:......|..|.:...:  ||:.|       .:..|:.|:            :.:|....|.
 Worm   478 VEKSEKLPRDPKKPIIVLKNEVEDTDPLGVMEHYHNYNRMLTT------------ISDGIPQRNQ 530

  Fly   481 AFEGIGDDDL 490
            ||..|.:|||
 Worm   531 AFTDITNDDL 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx17NP_609353.1 PX_SNX17_31 7..108 CDD:132795 34/108 (31%)
FERM-like_C_SNX17 280..391 CDD:270145 36/111 (32%)
snx-17NP_001076762.1 PX_SNX17_31 67..173 CDD:132795 34/108 (31%)
FERM-like_C_SNX17 356..459 CDD:270145 37/126 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158788
Domainoid 1 1.000 62 1.000 Domainoid score I6903
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8838
Inparanoid 1 1.050 143 1.000 Inparanoid score I3053
Isobase 1 0.950 - 0 Normalized mean entropy S5011
OMA 1 1.010 - - QHG52307
OrthoDB 1 1.010 - - D263172at33208
OrthoFinder 1 1.000 - - FOG0003603
OrthoInspector 1 1.000 - - oto20645
orthoMCL 1 0.900 - - OOG6_107920
Panther 1 1.100 - - LDO PTHR12431
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2951
SonicParanoid 1 1.000 - - X5262
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.890

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