DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL7 and Npsr1

DIOPT Version :10

Sequence 1:NP_523531.1 Gene:RpL7 / 34352 FlyBaseID:FBgn0005593 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_001100278.1 Gene:Npsr1 / 300458 RGDID:1564154 Length:371 Species:Rattus norvegicus


Alignment Length:81 Identity:18/81 - (22%)
Similarity:27/81 - (33%) Gaps:31/81 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 HNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFK----YASNF-------LWPFKLN 218
            |..|.||:.|          :..:.|.|.:.   ||.....:    :.|:|       ||...:.
  Rat    11 HANQTVPMLD----------SSPVACTEIVT---FTEALEAEEWGSFYSSFKTEQLITLWVLFVF 62

  Fly   219 TPTGG-------WRKK 227
            |..|.       ||:|
  Rat    63 TIVGNSVVLFSTWRRK 78

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL7NP_523531.1 uL30_euk 19..252 CDD:273548 18/81 (22%)
Npsr1NP_001100278.1 7tmA_NPSR 50..341 CDD:320325 7/29 (24%)
TM helix 1 51..77 CDD:320325 5/25 (20%)
TM helix 2 83..110 CDD:320325
TM helix 3 121..151 CDD:320325
TM helix 4 162..183 CDD:320325
TM helix 5 207..236 CDD:320325
TM helix 6 267..297 CDD:320325
TM helix 7 309..334 CDD:320325
Blue background indicates that the domain is not in the aligned region.

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