DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sur and Abcb10

DIOPT Version :9

Sequence 1:NP_001334732.1 Gene:Sur / 34350 FlyBaseID:FBgn0028675 Length:2223 Species:Drosophila melanogaster
Sequence 2:NP_062425.1 Gene:Abcb10 / 56199 MGIID:1860508 Length:715 Species:Mus musculus


Alignment Length:922 Identity:189/922 - (20%)
Similarity:329/922 - (35%) Gaps:296/922 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1344 ATNSILSISEESPPVV--------------HFPASILATDGNKNETQSEEKPKKCVNIDSKETTI 1394
            |.:|.:.::.|..|:|              .|||.:....|...:..:....::|..:.......
Mouse    25 AVSSRIWLASEWTPLVRAWTSLIHKPGSGLRFPAPLSGLPGGVGQWATSSGARRCWVLAGPRAAH 89

  Fly  1395 NCDDNCYSASD---KELRANVTSSPADQEQHNERHVLAEVAGESGRESMPLARLAIDTERKYGKI 1456
            ........|:.   ::|..:....||...:.....:|..|..|.||.|..:..||:.:       
Mouse    90 PLFARLQGAAATGVRDLGNDSQRRPAATGRSEVWKLLGLVRPERGRLSAAVGFLAVSS------- 147

  Fly  1457 SDDIYLMYIRAAGLPIITI---FFITALIWQCLRVYTDIWLQQWSNVHGRVASKGHVVLHPSE-Q 1517
                           :||:   ||:..:|        |:                 :..:||| .
Mouse   148 ---------------VITMSAPFFLGRII--------DV-----------------IYTNPSEGY 172

  Fly  1518 DHEVTYYFRMYAAISCVCIIMAL---VSTPAGQYAGCNARRNLHDKLLQTILHKTLHFFQVTPLG 1579
            ...:|   |:.|.::||.:..|.   :.....|.:|.:....|...|..:||.:.:.||..|..|
Mouse   173 GDSLT---RLCAVLTCVFLCGAAANGIRVYLMQSSGQSIVNRLRTSLFSSILRQEVAFFDKTRTG 234

  Fly  1580 RIVNRFSNDMAVIDKKI-------------AATGQRLLQFTLLCLSAILINVTITPWILVLTLPI 1631
            .::||.|:|.|::.:.:             |:.|..::.|....|:..:::|  .|.|.||.: |
Mouse   235 ELINRLSSDTALLGRSVTENLSDGLRAGAQASVGVGMMFFVSPSLATFVLSV--VPPISVLAV-I 296

  Fly  1632 CGAYYLIQKFYRCSARELQRIENATNSPVISH---LSETIQGVTTIRAFNQQTRFTEILFKRLEA 1693
            .|.|             |:::..||...:...   ..|.|..:.|||||.::  .||:       
Mouse   297 YGRY-------------LRKLSKATQDSLAEATQLAEERIGNIRTIRAFGKE--MTEV------- 339

  Fly  1694 NTIAYALLNTSHRWLGVSLDYLGGCIVFVATVTALTAASVSCRRHYEATTSPSASASPSPFETYA 1758
                       .::.| .:|.|    :.:|...||..|...                        
Mouse   340 -----------EKYTG-RVDQL----LQLAQKEALARAGFF------------------------ 364

  Fly  1759 VTKSPSELRPSPSLVGLAINYTLLVPIYLNWVVKLLADMEMYAGSVERIAHYAQGQDADADADAD 1823
                        ...||:.|..:|..:|...:  |:....|..|.:.....||            
Mouse   365 ------------GAAGLSGNLIVLSVLYKGGL--LMGSAHMTVGELSSFLMYA------------ 403

  Fly  1824 ADADVDADLDHEPSSNEDVSAEVDRSSQSDAGDKVYPGATTAAGDVDEDGDQQRIGGARGGGGDC 1888
                                              .:.|.:              ||         
Mouse   404 ----------------------------------FWVGLS--------------IG--------- 411

  Fly  1889 GYRQGHENGAEANADKLNAGNVTGDGNHLNFHHPPATAGDKVEQATTKTSVIKDKQLPPQQDDKD 1953
                    |..:...:|..|  .|.|..|         .:.:|         :..:||     .:
Mouse   412 --------GLSSFYSELMKG--LGAGGRL---------WELLE---------RQPRLP-----FN 443

  Fly  1954 KKVVLPNEPARKLERYQSVPISWPQRGDIHFDNVSLRYEGQKQNVISNLTLKIPAGQRIGICGRT 2018
            :.:||..:..:....:::|..::|.|.::              :|..:.:|.||:|....:.|.:
Mouse   444 EGMVLDEKTFQGALEFRNVHFTYPARPEV--------------SVFQDFSLSIPSGSVTALVGPS 494

  Fly  2019 GSGKSSLGLSLFGVLQTTRGHIYIDDVDIQRIRPDELRTRLSIIPQDVHLFNATIRENLDPHGYF 2083
            |||||::...|..:.....|.:.:|..||:::.|..||:::..:.|:..||:.::.||:   .|.
Mouse   495 GSGKSTVVSLLLRLYDPNSGTVSLDGHDIRQLNPVWLRSKIGTVSQEPVLFSCSVAENI---AYG 556

  Fly  2084 QD-------LQLWNCLELAQLKEFVNGHLPLGLDTVICDGGLNLSAGHRQLLCLARAILRGSVCL 2141
            .|       .|:....|:|...||:.. .|.|.|||:.:.|:.||.|.:|.:.:|||:|:....|
Mouse   557 ADNLSSVTAQQVERAAEVANAAEFIRS-FPQGFDTVVGEKGILLSGGQKQRIAIARALLKNPKIL 620

  Fly  2142 VLDEATSVLDSSTESALLKAADLAFRGRTIITIAHRLTTILDYDRLIVLDQGRIVEDGNPRELQQ 2206
            :||||||.||:..|..:.:|.|....|||::.|||||:||.:.:.:.|||.|:|.|.|...||..
Mouse   621 LLDEATSALDAENEHLVQEALDRLMEGRTVLIIAHRLSTIKNANFVAVLDHGKICEHGTHEELLL 685

  Fly  2207 LEGSVFRGLLEK 2218
            ....::|.|:.|
Mouse   686 KPNGLYRKLMNK 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SurNP_001334732.1 None
Abcb10NP_062425.1 3a01208 8..694 CDD:273363 187/917 (20%)
ABC_membrane 142..403 CDD:279056 71/389 (18%)
ABC_MTABC3_MDL1_MDL2 458..698 CDD:213216 82/258 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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