DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sur and pgp-14

DIOPT Version :9

Sequence 1:NP_001334732.1 Gene:Sur / 34350 FlyBaseID:FBgn0028675 Length:2223 Species:Drosophila melanogaster
Sequence 2:NP_510128.1 Gene:pgp-14 / 181416 WormBaseID:WBGene00004008 Length:1327 Species:Caenorhabditis elegans


Alignment Length:1964 Identity:371/1964 - (18%)
Similarity:625/1964 - (31%) Gaps:831/1964 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   440 DSSDSAGQVQSTSSTSDEKQKNDDS--MATPE-HVDNP-SEPNISHDIGSITNHMTED------- 493
            |..|:.|       ..|:::.:..|  :|.|. .|::| |:|.|:.|:.:  |::.:|       
 Worm     5 DDPDNRG-------FDDQRRPSQRSTVLAIPALAVNDPKSDPKIASDLPA--NYVDDDDDAPKMY 60

  Fly   494 TRNIMEFFLIIHYAW-----------AIPFKIAVVI-------YLLYMNLGISAVIGSIA----- 535
            |.:::|  .|::||.           |.|..|..:.       |||.....|.|:|..::     
 Worm    61 TPSLLE--KILNYALCRGDIANQQLEAQPVSIPGLFRYGKKFDYLLLFIGTICAIISGVSQPILA 123

  Fly   536 --------CIVIMTPLQFFIGNAMSKNAEVIAGYTDERLKRIHDTLVGIKVIKLNAWDEVFLKKI 592
                    .:::..|......|..::|..:..|             :||.:...|.         
 Worm   124 LVSGRVTNALLVYPPTSKQFRNKANENVYIFLG-------------IGIFISITNF--------- 166

  Fly   593 QEARRKELKYLNKDATFWTLMAVLTHIATVLITFVTLGVYVWLHRDQEFDLNAS-----RLFSSL 652
                   ::|:........:||.:.|.....:.....|   |      ||.|.|     :|..|:
 Worm   167 -------IQYMCFQHCCTRVMAQMRHRFVYSVLRQNAG---W------FDKNHSGTITTKLNDSM 215

  Fly   653 -----ALFQQLTVPLLIFPITVPIIIAARVSTRR------------------LERFLKSSEIQKQ 694
                 .:..:|.|.|..|.:.:..|:.|.:...|                  |.|.:.|:.| |:
 Worm   216 ERIREGIGDKLGVLLRGFAMLIAAIVVAYIYEWRLASMMLGVAPTCCICMSLLARQMTSTTI-KE 279

  Fly   695 FEGIRNMARILSKSDASLDMYETQEKSNMTMRTAQAENRLNE---KRLAQKSQTPELAT------ 750
            ..|:.....|             .|:|.|.:||.||.|...|   :..|:..:..:.|.      
 Worm   280 LIGVGKAGSI-------------AEESLMGVRTVQAFNGQEEMVGRYEAELEKGRKFAVWKGFWS 331

  Fly   751 ------------------------------NSTP-------------------------LLQNAE 760
                                          .:||                         :|.||.
 Worm   332 GFFGGLFFFWLFSFLGCGMLYGAYLLKVGIITTPGDVFIVVMSMLLGAYFLGLISPHMMVLLNAR 396

  Fly   761 ESAEDISPSTVQELGHNKLVQQRRELLRNTPYVAIRPPKMRGSVMERPVEFSVIRARNTDSWRRD 825
            .||..|             .|....:.:..||  .:..|...:|:.| |:|..:..|...  |:|
 Worm   397 VSAASI-------------YQTIDRVPKIDPY--SKAGKRLQNVVGR-VKFENVHFRYPS--RKD 443

  Fly   826 SLLLKMPDDIAVSINDGLFTWQPQSQMPVVQLHVPGIIVPKGKLTIVVGKNGSGKTSLLSALLME 890
            :.:|           :||                 .::|..|....:||.:|.||::.:..|...
 Worm   444 AKIL-----------NGL-----------------NLVVEPGTSVALVGHSGCGKSTSVGLLTRL 480

  Fly   891 MPLLAGNMF------------WHKTCTISYVSQQPWLLNDTIRENILFGESFRPKRYDFVLEACA 943
            ....|||:.            |.:. |:..|.|:|.|.||||..|:|.|.....:  :.::|.|.
 Worm   481 YEPEAGNVTIDGTDVRELNIEWLRN-TVGIVQQEPILFNDTIHNNLLIGNPGSTR--ETMIEVCK 542

  Fly   944 L---KPDIELMPRGDLSIIGERGINISGGQRQRIAIARAIYSSANVVIMDDPLASLDNEVGEHIF 1005
            :   ...||.||:|..::||:.|:.:||||:||:||||.:.....|:::|:..::||.: .|.|.
 Worm   543 MANAHDFIEKMPKGYDTLIGDGGVQLSGGQKQRVAIARTLIRDPKVLLLDEATSALDAQ-SESIV 606

  Fly  1006 QHCIREMLQKSNRTFILVTQQLHRIKEAEYLIAIKDGRVEACGSYADIELMQPRITAEWNAIIAM 1070
            |..:..  ....||.|::..:|..|:||:.::..:.|.:...|::.::..:..|       ...:
 Worm   607 QSALNN--ASKGRTTIMIAHRLSTIREADKIVFFEKGVIVEAGNHEELVRLGGR-------YFDL 662

  Fly  1071 AKAKNDNPSQNPGEKTAGERWKLLKNVSKLGLQRSISVTMDANVACHADAIDGSGCISVANMQSN 1135
            .||:     |...:..|.|.:                                            
 Worm   663 VKAQ-----QFKADPEATEEF-------------------------------------------- 678

  Fly  1136 VVEEDDQVSVSYPIGNASCGGFNLQRKRSSIYGSRHLMYDVPLPIDECQGDDVIMRPRRRHTLGR 1200
               |::::.:                                        ||.....||      
 Worm   679 ---EEEEIDL----------------------------------------DDTSRSSRR------ 694

  Fly  1201 RGSRNTNSSHRLSGLSTLTATSESSSISGDVLSRSVLATSCSSYAESSVDGGDLATAAPEPRVQS 1265
                                :|.:|:.||                                    
 Worm   695 --------------------SSMTSARSG------------------------------------ 703

  Fly  1266 WQPPQHVTHHQPLSRNASSPPAMEVANPDVKKSEEARRSNTSSESPLDDHVRGSFQQFLRRMSMR 1330
                                            ||..||.|:     |:|...||          :
 Worm   704 --------------------------------SEAFRRGNS-----LNDSFSGS----------K 721

  Fly  1331 RSNKPKNHHHPLSATNSILSISEESPPVVHFPASILATDGNKNETQSEEKPKKCVNIDSKETTIN 1395
            ||.:       ..|.||..:.:|         |:|:|.||                         
 Worm   722 RSAQ-------ADAENSAFAANE---------AAIMAEDG------------------------- 745

  Fly  1396 CDDNCYSASDKELRANVTSSPADQEQHNERHVLAEVAGESGRESMPLARLAIDTERKYGKISDDI 1460
                           .:|:...|..::.:.:.|....|                         .:
 Worm   746 ---------------QITAGYLDIFKNAKGNYLYMFLG-------------------------TV 770

  Fly  1461 YLMYIRAAGLPIITIFFITALIWQCLRVYTDIWLQQWSNVHGRVASKGHVVLHPSEQDHEVTYYF 1525
            :.: ||...||.:.:.|                        |.|......|.:.....|.:....
 Worm   771 FAL-IRGLELPALALIF------------------------GWVFEGFTFVPYGGRMMHRMAMAV 810

  Fly  1526 RMYAAIS--------CVCIIMALVSTPAGQYAGCNARRNLHDKLLQTILHKTLHFFQVTPL---G 1579
            ..:|::.        ...::.|:||..........:.|||        |::...:|. .|.   |
 Worm   811 IAFASVGVGVWFSQLASSVLFAVVSENLSMRFRVQSFRNL--------LYQDASYFD-NPAHAPG 866

  Fly  1580 RIVNRFSND----MAVIDKKIAATGQRLLQFTLLCLSAILINVTIT---PW---ILVLTLPICGA 1634
            :::.|.::|    .||:|       .|:|| .:..|:||:.|:.|.   .|   ||..:|.:..|
 Worm   867 KLITRLASDAPNIKAVVD-------ARMLQ-VIYALAAIIANIAIAFIYCWQIGILGTSLILLLA 923

  Fly  1635 YYLIQKFYRCSARELQRIENATNSPVISHLSE---TIQGVTTIRAF-------NQQTRFTEILFK 1689
            :.:|...|:.|...:::|:|.....:...:.|   |||.:|....|       ::|.:.:|:...
 Worm   924 FVMIGLAYKISLMNVEQIQNDDAGRIAIEIIENVKTIQLLTRCELFFDHYQTSSKQQKRSELKKG 988

  Fly  1690 RLEANTIAYALLNTSHRWLGVSLDYLGGCIVFVATVTALTAASVSCRRHYEATTSPSASASPSPF 1754
            .:||  |.|:|..        |..|...|.                                   
 Worm   989 MIEA--INYSLTQ--------SFMYFMMCF----------------------------------- 1008

  Fly  1755 ETYAVTKSPSELRPSPSLVGLAINYTLLVPIYLNWVVKLLADMEMYAGSVERIAHYAQGQDADAD 1819
             |||              ||:.|.|                                ||      
 Worm  1009 -TYA--------------VGIRIIY--------------------------------QG------ 1020

  Fly  1820 ADADADADVDADLDHEPSSNEDVSAEVDRSSQSDAGDKVYPGATTAAGDVDEDGDQQRIGGARGG 1884
                                       |:||     |..:.|...           ..:|..   
 Worm  1021 ---------------------------DKSS-----DDTFKGIIA-----------MMLGAV--- 1039

  Fly  1885 GGDCGYRQGHENGAEANADKLNAGNVTGDGNHLNFHHPPATAGDKVEQATTKTSVIKDKQLPPQQ 1949
                    ...|.|:...:.:.|  .|..|...|..:.....||.:|                  
 Worm  1040 --------AVMNSAQYFPEFVKA--KTAAGMLFNIIYRKPRTGDLME------------------ 1076

  Fly  1950 DDKDKKVVLPNEPARKLERYQSVPISWPQRGDIHFDNVSLRY-EGQKQNVISNLTLKIPAGQRIG 2013
              .|:..:                     ||:|.|:||...| :...|.::..|......||.:.
 Worm  1077 --GDRPEI---------------------RGNILFENVKFSYPQRPLQPIMKGLQWTALRGQTVA 1118

  Fly  2014 ICGRTGSGKS-SLGLSLFGVLQTTRGHIYIDDVDIQRIRPDELRTRLSIIPQDVHLFNATIRENL 2077
            :.|.:||||| ::|: |......|.|.:.||..||:::....|||:::::.|:..||..|||||:
 Worm  1119 LVGPSGSGKSTNIGM-LERFYDVTGGALRIDGQDIRKLSLFHLRTQMALVGQEPRLFAGTIRENV 1182

  Fly  2078 DPHGYFQDLQLW---NCLELAQLKEFVNGHLPLGLDTVICDGGLNLSAGHRQLLCLARAILRGSV 2139
            ...  .:|:.|.   ..||||....|: .:||.|:||.:.:.|..||.|.:|.:.:|||::|...
 Worm  1183 CLG--LKDVPLEKINQALELANANRFL-ANLPAGIDTDVGEKGGQLSGGQKQRIAIARALVRDPK 1244

  Fly  2140 CLVLDEATSVLDSSTESALLKAADLAFRGRTIITIAHRLTTILDYDRLIVLDQGRIVEDGNPREL 2204
            .|:||||||.|||.:|.|:.:|.|.|..|||.|||||||::|.:.|.::.:|:|::.|.||..:|
 Worm  1245 ILLLDEATSALDSESERAVQEALDRAREGRTCITIAHRLSSIQNSDLIVYIDKGKVQEAGNHTQL 1309

  Fly  2205 QQLEGSVFRGLLEK 2218
            ...:|..:: |::|
 Worm  1310 MHQKGRYYK-LIKK 1322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SurNP_001334732.1 None
pgp-14NP_510128.1 PTZ00265 104..1321 CDD:240339 345/1851 (19%)
ABC_membrane 109..377 CDD:279056 49/319 (15%)
ABC_MTABC3_MDL1_MDL2 429..666 CDD:213216 70/279 (25%)
ABC_membrane 769..1039 CDD:294371 74/452 (16%)
ABC_MTABC3_MDL1_MDL2 1086..1323 CDD:213216 91/242 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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