DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sur and pgp-5

DIOPT Version :9

Sequence 1:NP_001334732.1 Gene:Sur / 34350 FlyBaseID:FBgn0028675 Length:2223 Species:Drosophila melanogaster
Sequence 2:NP_001257116.1 Gene:pgp-5 / 181276 WormBaseID:WBGene00003999 Length:1252 Species:Caenorhabditis elegans


Alignment Length:1830 Identity:337/1830 - (18%)
Similarity:569/1830 - (31%) Gaps:799/1830 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   469 EHVDNPSEPNISHDIGSITNHMTEDTRNIMEFFLIIHYAWAIPFKIAVVIYLLYMNLGISAVIGS 533
            :::......:||:..|..|.|::....:.||.|..:...     |||::|.||            
 Worm   132 QYISRLLRKDISYFDGMSTGHLSIVLNDNMERFREVFNE-----KIALIIALL------------ 179

  Fly   534 IACIVIMTPLQFFIGNAMSKNAEVIAGYTDERLKRIHDTLVGIKVI---KLNAWDEVFLKKIQEA 595
                     ..|.||.       ::|.|||.|| ..:.|:....::   .|::|.::   |..|.
 Worm   180 ---------TDFVIGT-------ILAFYTDWRL-ACYGTVFSFGIVLSGLLDSWGKM---KNNEK 224

  Fly   596 RRKELKYLNKDATFWTLMAVLTHIATV-LITFVTLGVYVWLHRDQEFDLNASRLFSSLALFQQLT 659
            :.:                   ||:.. .|.|..||.|              :..|||...||  
 Worm   225 QNE-------------------HISNAGSIAFQALGCY--------------KTVSSLNGQQQ-- 254

  Fly   660 VPLLIFPITVPIIIAARVSTRRLERFLKSSEIQKQFEGIRNMARILSKSDASLD----------- 713
                                 .:||:  :.|::...:...|.|.:.|.| .|.|           
 Worm   255 ---------------------EVERY--TEELKNGEKYALNRAFVFSLS-RSADYFFTNALNFVI 295

  Fly   714 -------MYETQEKSNMTMRT---------AQAENRLNEKRLAQKSQTPELATNSTPLLQNAEES 762
                   :||...:..:.:|.         ...|..|:..|||  |..| |......:|.:::.:
 Worm   296 LYFGANMIYEGTIEPGVVVRILYYILFGSYCLGEAILHISRLA--SAIP-LTVPIADILLDSDAT 357

  Fly   763 AEDISPSTVQELGHNKLVQQRRELLRNTPYVAIRPPKMRGSVMERPVEFSVIRARNTDSWRRDSL 827
            |::.....:::                                    .|..|             
 Worm   358 ADEFFSEEIKD------------------------------------TFQGI------------- 373

  Fly   828 LLKMPDDIAVSINDGLFTWQPQSQMPV---VQLHVPGIIVPKGKLTIVVGKNGSGKTSLLSALLM 889
                     :|..:.||::..:..:||   :..:|.|     |:...:||.:||||::::..||.
 Worm   374 ---------ISFKNVLFSYPTRPDVPVLKEISFNVQG-----GECIALVGASGSGKSTVIQLLLH 424

  Fly   890 EMPL------LAGNMFWHKTC-----TISYVSQQPWLLNDTIRENILFGESFRPKR--------- 934
            ...:      :.||..::...     .:..|.|:|.|.|.:|.|||.||:....::         
 Worm   425 YYNIDSGRISIDGNDIYNINIKQLRQAMGVVFQEPVLFNTSIEENIRFGKPDATEQEIIDALKNA 489

  Fly   935 --YDFVLEACALKPDIELMPRGDLSIIGERGINISGGQRQRIAIARAIYSSANVVIMDDPLASLD 997
              :|||..          .|.|..:|:||||..:||||:|||||||.:..:..::::|:..::||
 Worm   490 NAFDFVCN----------FPDGIKTIVGERGAQLSGGQKQRIAIARTLVRNPRILLLDEATSALD 544

  Fly   998 NEVGEHIFQHCIREMLQKSN--RTFILVTQQLHRIKEAEYLIAIKDGRVEACGSYADIELMQPRI 1060
            || .|.|    ::|.|||::  ||.|:|..:|..|:.|..:|.::.|.:...|.:          
 Worm   545 NE-SEFI----VQEALQKASIGRTTIVVAHRLSTIRNANKIIVMEKGEIVEVGDH---------- 594

  Fly  1061 TAEWNAIIAMAKAKNDNPSQNPGEKTAGERWKLLKNVSKLGLQRSISVTMDANVACHADAIDGSG 1125
                ..:|||....| |..|.....|..|  |:.:|..::..|.|.| ...:|...|        
 Worm   595 ----KQLIAMNGVYN-NLVQTQLMSTNYE--KMNENEERVTRQSSHS-DFPSNEISH-------- 643

  Fly  1126 CISVANMQSNVVEEDDQVSVSYPIGNASCGGFNLQRKRSSIYGSRHLMYDVPLPIDECQGDDVIM 1190
                    ..:.:|||.|                          :.|:.::.             
 Worm   644 --------QKIDQEDDYV--------------------------KKLIAEIK------------- 661

  Fly  1191 RPRRRHTLGRRGSRNTN---------SSHRLSGLSTLTATSESSSISGDV--LSRSVLATSCSSY 1244
                     ..|::.:|         |.:.:..::.|     .|:|.|..  ||..::..|..:|
 Worm   662 ---------EEGAKKSNICEIIKYCRSEYCILFIAVL-----GSAIQGIYYPLSSQLMIKSYEAY 712

  Fly  1245 AESSVDGGDLATAAPEPRVQSWQPPQHVTHHQPLSRNASSPPAMEVANPDVKKSEEARRSNTSSE 1309
            |   .|..::.:                                                     
 Worm   713 A---FDKDEMLS----------------------------------------------------- 721

  Fly  1310 SPLDDHVRGSFQQFLRRMSMRRSNKPKNHHHPLSATNSILSISEESPPVVHFPASILATDGNKNE 1374
                                      |:|...|    |||.::...|..:.|..........|..
 Worm   722 --------------------------KSHFWAL----SILFLAFTRPIFIFFQYYFFGKTAEKLS 756

  Fly  1375 TQSEEKPKKCVNIDSKETTINC---DDNCYSASDKELRANVTSSPADQEQHNERHVLAEVAGESG 1436
            .:......|.:      .::.|   ||.|::|:....|.|..||          :|.|.|....|
 Worm   757 IKLRSMSFKHL------MSLPCAFYDDPCHTATRLSNRLNADSS----------NVTAAVDDRLG 805

  Fly  1437 RESMPLARLAIDTERKYGKISDDIYLMYIRAAGLPIITIFFITALIWQCLRVYTDIWLQQWSNVH 1501
            ...|.|..:.                       |.:|..||                        
 Worm   806 SVIMTLVAIL-----------------------LAVIMSFF------------------------ 823

  Fly  1502 GRVASKGHVVLHPSEQDHEVTYYFRMYAAISCVCIIMALVSTPAGQYAG-CNARRNLHDKLLQTI 1565
                                 |.::|...:...|.::.|        || ||      |..:   
 Worm   824 ---------------------YSWKMSLQVLMFCPLLYL--------AGYCN------DNFV--- 850

  Fly  1566 LHKTLHFFQVTPLGRIVNRFSNDMAVIDKKIAATGQRLLQFTLLCLSAILINVTITPWILVLTLP 1630
                                  |.||.:..||                                 
 Worm   851 ----------------------DQAVEEDSIA--------------------------------- 860

  Fly  1631 ICGAYYLIQKFYRCSARELQRIENATNSPVISHLSETIQGVTTIRAFNQQTRFTEILFKRLEANT 1695
                      |.:.:...::.:||                |.|:||.|.:.|...::...|:...
 Worm   861 ----------FEKSNRAAIEALEN----------------VRTVRALNMENRVILLVTSHLQKIR 899

  Fly  1696 IAY---ALLNTSHRWLGVSLDYLGGCIVFVATVTALTAASVSCRRHYEATTSPSASASPSPFETY 1757
            .:|   |::.      |.:..:...|..|:..|:                         ..|.|:
 Worm   900 NSYFKRAVIQ------GTANGFACSCYFFIYAVS-------------------------FKFGTW 933

  Fly  1758 AVTKSPSELRPSPSLVGLAINYTLLVPIYLNWVVKLLADMEMYAGSVERIAHYAQGQDADADADA 1822
            .|.:  .|:.|              :..||  |:..|:....||||.  :|:..           
 Worm   934 LVLR--EEILP--------------MDTYL--VLMTLSMTASYAGSA--VAYLP----------- 967

  Fly  1823 DADADVDADLDHEPSSNEDVSAEVDRSSQSDAGDKVYPGATTAAGDVDEDGDQQRIGGARGGGGD 1887
                      ||..                         |..|||.:                  
 Worm   968 ----------DHRK-------------------------AIHAAGLI------------------ 979

  Fly  1888 CGYRQGHENGAEANADKLNAGNVTGDGNHLNFHHPPATAGDKVEQATTKTSVIKDKQLPPQQDDK 1952
                                       .|| |.:|                     .:.|....:
 Worm   980 ---------------------------FHL-FTYP---------------------AIMPYDSSQ 995

  Fly  1953 DKKVVLPNEPARKLERYQSVPISWPQRGDIHFDNVSLRY-EGQKQNVISNLTLKIPAGQRIGICG 2016
            .|:.:                    :.|:|...|||..| :...:.::..::||:|||:.:.:.|
 Worm   996 GKRNI--------------------KNGEIELKNVSFEYAQRSDKMILDGVSLKLPAGRTLALVG 1040

  Fly  2017 RTGSGKSSLGLSLFGVLQTTRGHIYIDDVDIQRIRPDELRTRLSIIPQDVHLFNATIRENL---D 2078
            .:|||||::...|........|.:.||:.::..:....||..:|::.|:..|||.:|:||.   .
 Worm  1041 PSGSGKSTIISLLERFYHAVDGEVKIDEENVVDVNLHHLRESVSLVSQEPVLFNCSIKENFLFGI 1105

  Fly  2079 PHGYFQDLQLWNCLELAQLKEFVNGHLPLGLDTVICDGGLNLSAGHRQLLCLARAILRGSVCLVL 2143
            .|...| |::...|::|....||: ..|.||||::.:.|..||.|.:|.:.:||||||....|:|
 Worm  1106 SHNASQ-LEIDQALKVANAFSFVS-QFPQGLDTLVGERGAQLSGGQKQRIAIARAILRNPKVLLL 1168

  Fly  2144 DEATSVLDSSTESALLKAADLAFRGRTIITIAHRLTTILDYDRLIVLDQGRIVEDGNPRELQQLE 2208
            |||||.|||.:|..:..|.|.|....:.:.:||||:|:::.|.:.||..|::.|.|...||.: :
 Worm  1169 DEATSALDSDSEKVVQNALDTASERLSTVVVAHRLSTVVNADSIAVLKNGKVAEQGTHEELLR-K 1232

  Fly  2209 GSVFRGLLEK 2218
            .|::..|::|
 Worm  1233 RSIYWRLVQK 1242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SurNP_001334732.1 None
pgp-5NP_001257116.1 PTZ00265 27..1241 CDD:240339 336/1827 (18%)
ABC_membrane 41..322 CDD:294371 52/285 (18%)
ABC_MTABC3_MDL1_MDL2 374..611 CDD:213216 77/271 (28%)
ABC_membrane 688..955 CDD:294371 78/588 (13%)
ABC_MTABC3_MDL1_MDL2 1005..1243 CDD:213216 83/241 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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