DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sur and cft-1

DIOPT Version :9

Sequence 1:NP_001334732.1 Gene:Sur / 34350 FlyBaseID:FBgn0028675 Length:2223 Species:Drosophila melanogaster
Sequence 2:NP_504463.1 Gene:cft-1 / 178939 WormBaseID:WBGene00000477 Length:1247 Species:Caenorhabditis elegans


Alignment Length:1899 Identity:321/1899 - (16%)
Similarity:590/1899 - (31%) Gaps:819/1899 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   371 KVRIYSSTWSDLLANGWCIAWIVLLAAITQGALSQASTHILNMTGIRIKTSLQGLIYRKSLLLNA 435
            |..|.|:..|..|.|.:.||.::|.....:..|....|:::....:.:.|.|..:|.:|:|.|  
 Worm   111 KYLIDSAEISATLFNFFIIAVLILFFMQLKSLLLGVHTYLVGEDSVEMVTVLNNIIVKKALHL-- 173

  Fly   436 DGGCDSSDSAGQVQSTSSTSDEKQKNDDSMATPEHVDNPSEPNISHDIGSITNHMTEDTRNIMEF 500
                           ||..:|..:.....:                    :|.| :|...|.:.:
 Worm   174 ---------------TSENTDWNRSKISKL--------------------LTTH-SEAVSNGLAY 202

  Fly   501 FLIIHYAWAIPFKIAVVIYLLYMNLGISAVIGSIACIVIMTPLQFFIGNAM-----SKNAEVIAG 560
               :|::.:...::.:.::.::..||...:|     :|::..|.:.:.|.:     .|:.:|...
 Worm   203 ---VHHSCSALIELTIALFWIWETLGTRTII-----VVLIVALVYAVFNIIDSYVYKKSLKVQLK 259

  Fly   561 YTDERLKRIHDTLVGIKVIKLNAWDEVFLKKIQEARRKELKYLNKDATFWTLMAVLTHIATVLIT 625
            ..|||::.....|..::.||:.:|:..|.||::..|.|||....|..:..:.|..|...:..:||
 Worm   260 CRDERVEFEKTVLNSMETIKMFSWEPHFWKKLKSMRGKELSVFRKTLSINSFMHSLNVTSPFVIT 324

  Fly   626 FVTLGVYVWLHRDQEFDLNASRL---FSSLALFQQLTVPL-LIFPITVPIIIAARVSTRRLERFL 686
            ||:..||     ..:::::|.|.   |..:|:|..:..|| :|.|           |...:::.|
 Worm   325 FVSFAVY-----GLQYEISALRFEDAFVLIAIFNYMRRPLHVIIP-----------SLEIVDKAL 373

  Fly   687 KSSEIQKQFEGIRNMARILSKSDASLDMYETQEKSNMTMRTAQAENRLNEKRLAQKSQTPELATN 751
            .|:.|..||..::                                            |:|::.|.
 Worm   374 HSATIINQFLIVK--------------------------------------------QSPKINTK 394

  Fly   752 STPLLQNAEESAEDISPSTVQELGHNKLVQQRRELLRNTPYVAIRPPKMRGSVMERPVEFSVIRA 816
            :.|                                         :||      :|..::..::.|
 Worm   395 TAP-----------------------------------------QPP------VEPDLDIKILNA 412

  Fly   817 RNTDSWRRDSLLLKMPDDIAVSINDGLFTWQPQSQMPVVQLHVPGIIVPKGKLTIVVGKNGSGKT 881
              ..||..       .||   ::||             |.:|     |.||:....:|....||:
 Worm   413 --NFSWNG-------KDD---TLND-------------VCVH-----VKKGEKHAFIGFPLCGKS 447

  Fly   882 SLLSALLMEMPLLAGNMFWHKTCTISYVSQQPWLLNDTIRENILFGESFRPKRYDFVLEACALKP 946
            |||.::..|:.:..|||:..|  .||:....|::.:.:::||||||..:...:||.|:.||.||.
 Worm   448 SLLFSITGELKMTKGNMWVSK--GISFAPASPYIFSQSLKENILFGNDYVKSKYDKVIMACDLKK 510

  Fly   947 DIELMPRGDLSIIGERGINISGGQRQRIAIARAIYSSANVVIMDDPLASLDNEVGEHIFQHCIRE 1011
            ||..:||.:.:::|::|..::..|:.:|::||.:|..|::..:|.....:|......||...:.|
 Worm   511 DIFSLPRCEATVLGDKGYVLTSTQKAQISLARCLYEDADIYALDKAFGPMDRTTSNKIFTRVLGE 575

  Fly  1012 MLQKSNRTFILVTQQLHRIKEAEYLIAIKDGRVEACGSYADIELMQPRITAEWNAIIAMAKAKND 1076
            .....::|.||.|..:..||....:..:|:|::|..|||                          
 Worm   576 NGYLRDKTVILATNNIELIKTFTMVHVLKNGKIETSGSY-------------------------- 614

  Fly  1077 NPSQNPGEKTAGERWKLLKNVSKLGLQRSISVTMDANVACHADAIDGSGCISVANMQSNVVEEDD 1141
                                                                            |
 Worm   615 ----------------------------------------------------------------D 615

  Fly  1142 QVSVSYPIGNASCGGFNLQRKRSSIYGSRHLMYDVPLPIDECQGDDVIMRPRRRHTLGRRGSRNT 1206
            |:.                                     ||                       
 Worm   616 QIL-------------------------------------EC----------------------- 620

  Fly  1207 NSSHRLSGLSTLTATSESSSISGDVLSRSVLATSCSSYAESSVDGGDLATAAPEPRVQSWQPPQH 1271
                              |.|..|:|:            :|.:|                     
 Worm   621 ------------------SEIMSDLLN------------QSRID--------------------- 634

  Fly  1272 VTHHQPLSRNASSPPAMEVANPDVKKSEEARRSNTSSESPLDDHVRGSFQQFLRRMSMRRSNKPK 1336
                                                                             
 Worm   635 ----------------------------------------------------------------- 634

  Fly  1337 NHHHPLSATNSILSISEESPPVVHFPASILATDGNKNETQSEEKPKKCVNIDSKETTINCDDNCY 1401
                         .|.||.                    .|:|||.:        .|:..||...
 Worm   635 -------------KIIEEK--------------------YSDEKPPR--------KTVMFDDKVL 658

  Fly  1402 SASDKELRANVTSSPADQEQHNERHVLAEVAGESGRESMPLARLAIDTERKYGKISDDIYLMYIR 1466
            ....|:                          :|..::.|:..            :..:|..|.|
 Worm   659 KKRKKK--------------------------QSMEDTAPVFE------------NRSVYPFYFR 685

  Fly  1467 AAGLPIITIFFITALI----WQCLRVYTDIWLQQWSNVHGRVASKGHVVLHPSEQDHEVTYYF-- 1525
             :|..|.|.|:|..||    :|.|..:   ||..|.:          .|....|.::...|.|  
 Worm   686 -SGSFIFTAFYIVLLICRFVFQALAFF---WLSFWLD----------PVWKKVECENCPQYVFIQ 736

  Fly  1526 -RMYAAISCVCIIMALVSTPAGQYAGCNARRNLHDKLLQTILHKTLHFFQVTPLGRIVNRFSNDM 1589
             ..:.|||  .||..::|............|.|:..:...|....:.|...|....::|..::|:
 Worm   737 TMSFFAIS--AIISTMLSYTFFVLTNVQTSRKLYQHITSAIFAVPMIFLSPTNKESLMNMITSDL 799

  Fly  1590 AVIDKK--------IAATGQRLLQFTLLCLSAILINVTITPWILVLTLPICGAY-YLIQKFYRCS 1645
            .::|.:        ...|...|:.|.::|::..:..:.:..:::.|.    |.. |.:...::.|
 Worm   800 DIVDTQFPLFFKFSFECTLHILMIFAIVCVNVPVFAIFVVAFLIFLV----GLLRYFLPALHKIS 860

  Fly  1646 ARELQR--------IENATNSPVISHLSETIQGV--TTIRAFNQQTRFTEILFKRLEANTIAYAL 1700
            :.|.|:        ||:.....::....:|.|.:  |::.|        :||.:   .....|:.
 Worm   861 SLEEQKRDLFLCGSIEDFEARIMVRTFGKTRQTLAKTSVNA--------DILTR---CRMARYST 914

  Fly  1701 LNTSHRWLGVSLDYLGGCIV----FVATVT-----------ALTAASVSCRRHYEATTSPSASAS 1750
            |    ||:.:..:::...::    |:|::.           ||:.||:.|               
 Worm   915 L----RWISLRTEFISNLMICMCFFIASICLKVDYIGNAQFALSVASILC--------------- 960

  Fly  1751 PSPFETYAVTKSPSELRPSPSLVGLAINYTLLVPIYLNWVVKLLADMEMYAGSVERIAHYAQGQD 1815
                              ...||...|..|.:              :|.....|:||::..:   
 Worm   961 ------------------ISELVSTFIRTTCI--------------LESLTPHVQRISNVRE--- 990

  Fly  1816 ADADADADADADVDADLDHEPSSNEDVSAEVDRSSQSDAGDKVYPGATTAAGDVDEDGDQQRIGG 1880
                                                       ||                    
 Worm   991 -------------------------------------------YP-------------------- 992

  Fly  1881 ARGGGGDCGYRQGHENGAEANADKLNAGNVTGDGNHLNFHHPPATAGDKVEQATTKTSVIKDKQL 1945
                             .|...||                                 ..|:|   
 Worm   993 -----------------KEPMIDK---------------------------------CTIRD--- 1004

  Fly  1946 PPQQDDKDKKVVLPNEPARKLERYQSVPISWPQRGDIHFDNVSLRYEGQKQNVISNLTLKIPAGQ 2010
                                         |||..|.|...|::: :..:.::||.:::|.|...:
 Worm  1005 -----------------------------SWPDDGKIEIKNLNV-FANKYRHVIKDVSLVIEERE 1039

  Fly  2011 RIGICGRTGSGKSSLGLSLFGVLQTT---RGHIYIDDVDIQRIRPDELRTRLSIIPQDVHLFNAT 2072
            ::||.|:.|||||.|..:|  |:.::   ..||.:||:||..:....||:|:::|||...:|:.|
 Worm  1040 KLGIIGKVGSGKSQLAKTL--VMMSSADKESHIVVDDLDIFEMSVKTLRSRITVIPQKAKIFSDT 1102

  Fly  2073 IRENLDPHGYFQDLQLWNCLELAQLKEFVNGHLPLGLDTVICDGGLNLSAGHRQLLCLARAILRG 2137
            :|.|:||...|.|..:|..:|..||:|:|.. ||.||..::...  .:|...:..:.:.||:|:|
 Worm  1103 LRSNIDPCCQFADSDIWLAIEACQLREYVKS-LPDGLHQMVSPE--KMSNEQKCQVNVCRALLKG 1164

  Fly  2138 SVCLVLDEATSVLDSSTESALLKAADLAFRGRTIITIAHRLTTILDYDRLIVLDQGRIVEDGNPR 2202
            ....|:|::|.::....:|.:.:|...:.:..|.|.|....:.:...||::|::.|.|:....|:
 Worm  1165 GQIFVIDQSTKMMKEPIKSLVNEAIRNSLKQSTTIWIGEDFSDVEHCDRVVVIENGVILTTDTPQ 1229

  Fly  2203 ELQQLEGSVFRGLL 2216
            .|....||:.:.||
 Worm  1230 NLISEFGSLQKCLL 1243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SurNP_001334732.1 None
cft-1NP_504463.1 MdlB 76..631 CDD:224055 154/884 (17%)
ABC_membrane 93..359 CDD:294371 61/298 (20%)
P-loop_NTPase 407..607 CDD:304359 63/231 (27%)
ABC_membrane 696..938 CDD:294371 49/275 (18%)
P-loop_NTPase 1010..1228 CDD:304359 66/223 (30%)
EcfA2 1012..1234 CDD:224047 67/227 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D138195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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