DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pen and kpna3

DIOPT Version :9

Sequence 1:NP_477041.1 Gene:Pen / 34338 FlyBaseID:FBgn0267727 Length:522 Species:Drosophila melanogaster
Sequence 2:NP_001016060.1 Gene:kpna3 / 548814 XenbaseID:XB-GENE-953229 Length:521 Species:Xenopus tropicalis


Alignment Length:512 Identity:240/512 - (46%)
Similarity:324/512 - (63%) Gaps:16/512 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 NSRQGSYKANSINTQDSRMRRHEVTIELRKSKKEDQMFKRRNI------NDEDLTSPLKELNGQS 65
            |.|..|:|....:.:..|..|:|||:||||:|:::.:.|:||:      .|.|:....|..|   
 Frog     9 NHRIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDGDFKSQN--- 70

  Fly    66 PVQLSVDEIVAAMNSEDQERQFLGMQSARKMLSRERNPPIDLMIGHGIVPICIRFLQNTNNSMLQ 130
               ::::.|:....|::...|...:|:|||:||.:||||||.:|..||:||.::.|:..:|..||
 Frog    71 ---VTLEAILQNATSDNPAIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLEADDNPSLQ 132

  Fly   131 FEAAWALTNIASGTSDQTRCVIEHNAVPHFVALLQSKSMNLAEQAVWALGNIAGDGAAARDIVIH 195
            |||||||||||||||.||:.|::.||||.|:.||.|...|:.||||||||||.|||...||.||.
 Frog   133 FEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLHSLHQNVCEQAVWALGNIIGDGPQCRDYVIS 197

  Fly   196 HNVIDGILPLINNETPLSFLRNIVWLMSNLCRNKNPSPPFDQVKRLLPVLSQLLLSQDIQVLADA 260
            ..|:..:|..||...|::||||:.|::.||||||:|.||.:.|:.:||.|..|:...||.:|.|.
 Frog   198 LGVVKPLLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDT 262

  Fly   261 CWALSYVTDDDNTKIQAVVDSDAVPRLVKLLQMDEPSIIVPALRSVGNIVTGTDQQTDVVIASGG 325
            .|||||:||..|.:||.|:||..||.||.||...|..:...|||:|||||||||:||.||:....
 Frog   263 VWALSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDV 327

  Fly   326 LPRLGLLLQHNKSNIVKEAAWTVSNITAGNQKQIQAVIQAGIFQQLRTVLEKGDFKAQKEAAWAV 390
            |.....||.|.|..|.|||.|.:||||||||:|:||||.||:...:...|.||||..|||||||:
 Frog   328 LSHFHNLLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAI 392

  Fly   391 TNTTTSGTPEQIVDLIEKYKILKPFIDLLDTKDPRTIKVVQTGLSNLFALAEKLGGTENLCLMVE 455
            :|.|.||..:|:..|::: .::.||..||..||.:.::||..||.|:..:|.....|  :..::|
 Frog   393 SNLTISGRKDQVEYLVQQ-NVIPPFCSLLSVKDSQVVQVVLDGLKNILIMAGDEAST--IAEIIE 454

  Fly   456 EMGGLDKLETLQQHENEEVYKKAYAIIDTYFSNGDDEAEQELAPQEV-NGALEFNAT 511
            |.|||:|:|.||||||||:||.|:.|||.|||..|.:.:|.|.|:.. .|...|..|
 Frog   455 ECGGLEKIEALQQHENEEIYKLAFEIIDQYFSGDDIDEDQSLVPEATPGGTYHFEPT 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PenNP_477041.1 SRP1 2..517 CDD:227396 240/512 (47%)
HEAT repeat 70..102 CDD:293787 9/31 (29%)
armadillo repeat 108..140 CDD:293788 17/31 (55%)
armadillo repeat 148..184 CDD:293788 21/35 (60%)
armadillo repeat 190..225 CDD:293788 14/34 (41%)
armadillo repeat 359..396 CDD:293788 20/36 (56%)
armadillo repeat 402..437 CDD:293788 11/34 (32%)
kpna3NP_001016060.1 SRP1 7..521 CDD:227396 240/512 (47%)
armadillo repeat 73..98 CDD:293788 6/24 (25%)
armadillo repeat 109..142 CDD:293788 17/32 (53%)
armadillo repeat 150..186 CDD:293788 21/35 (60%)
armadillo repeat 192..227 CDD:293788 14/34 (41%)
armadillo repeat 244..269 CDD:293788 12/24 (50%)
armadillo repeat 277..313 CDD:293788 19/35 (54%)
armadillo repeat 319..353 CDD:293788 14/33 (42%)
armadillo repeat 361..395 CDD:293788 18/33 (55%)
armadillo repeat 404..438 CDD:293788 11/34 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 66 1.000 Domainoid score I9838
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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