DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pen and kpna2

DIOPT Version :9

Sequence 1:NP_477041.1 Gene:Pen / 34338 FlyBaseID:FBgn0267727 Length:522 Species:Drosophila melanogaster
Sequence 2:XP_012821932.1 Gene:kpna2 / 493517 XenbaseID:XB-GENE-979796 Length:528 Species:Xenopus tropicalis


Alignment Length:508 Identity:265/508 - (52%)
Similarity:351/508 - (69%) Gaps:18/508 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 QDSRMRRHEVTIELRKSKKEDQMFKRRNIN--DEDLTSPLKE--LNGQSPVQLSVDEIVAAMNSE 81
            |:.|.||.||.:||||:||:|||.||||::  .::.||||:|  .|||:..|.||:|||..:.|.
 Frog    23 QEMRRRRIEVNVELRKAKKDDQMLKRRNVSTFPDEPTSPLQEKNQNGQTSTQWSVEEIVRGVASS 87

  Fly    82 DQERQFLGMQSARKMLSRERNPPIDLMIGHGIVPICIRFLQNTNNSMLQFEAAWALTNIASGTSD 146
            ..|.|....|:|||:|||||.||||.:|..|::|..:.||..|:.|.:|||||||||||||||||
 Frog    88 SLEIQLQATQAARKLLSREREPPIDRIIQAGLIPKLVAFLARTDCSPIQFEAAWALTNIASGTSD 152

  Fly   147 QTRCVIEHNAVPHFVALLQSKSMNLAEQAVWALGNIAGDGAAARDIVIHHNVIDGILPLINNETP 211
            ||:.|:|...||.|::||.|...:::||||||||||||||:|.||:||.|..:..:|.|: .:..
 Frog   153 QTKAVVEGGGVPAFISLLASPHPHISEQAVWALGNIAGDGSAYRDLVIKHGAVGPLLALL-ADPD 216

  Fly   212 LS-----FLRNIVWLMSNLCRNKNPSPPFDQVKRLLPVLSQLLLSQDIQVLADACWALSYVTDDD 271
            ||     :|||:.|.:|||||||||:||.|.::::||.|.:||...|.:||||.|||:||:||..
 Frog   217 LSTLATGYLRNVTWTLSNLCRNKNPAPPLDAIQQILPTLVRLLHHDDREVLADTCWAVSYLTDGS 281

  Fly   272 NTKIQAVVDSDAVPRLVKLLQMDEPSIIVPALRSVGNIVTGTDQQTDVVIASGGLPRLGLLLQHN 336
            |.:|..||.:..|||:|:||...|.:|:.|.||:|||||||||:||.||:.:|.|.....||.|:
 Frog   282 NDRINVVVGTGLVPRIVQLLGCGELTIVTPCLRTVGNIVTGTDEQTQVVLDAGALSVFAELLTHH 346

  Fly   337 KSNIVKEAAWTVSNITAGNQKQIQAVIQAGIFQQLRTVLEKGDFKAQKEAAWAVTNTTTSGTPEQ 401
            |:||.||||||:||||||.|.|||.|:..|:...|..:|.|.|:|.||||.|||||.|:.||.:|
 Frog   347 KNNIQKEAAWTLSNITAGRQDQIQEVVNHGLIPYLIEILRKADYKTQKEAIWAVTNYTSGGTIDQ 411

  Fly   402 IVDLIEKYKILKPFIDLLDTKDPRTIKVVQTGLSNLFALAEKLGGTENLCLMVEEMGGLDKLETL 466
            |:.|:: ..:::|..:||..||.:|:.|:....:|:||.|||||.||.|||||||.||||::|.|
 Frog   412 IIYLVQ-CSVIEPLSNLLSVKDSKTVLVILDAFTNVFAAAEKLGETEKLCLMVEECGGLDRIEAL 475

  Fly   467 QQHENEEVYKKAYAIIDTYFSNGDDEAEQELAPQEVNGALEFNATQPKAPEGG 519
            |.||||:|||.:..:|:.|||..|.| ::.|||:..:....|..      |||
 Frog   476 QSHENEQVYKASAGLIEKYFSAEDGE-DESLAPETTSDGYTFQV------EGG 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PenNP_477041.1 SRP1 2..517 CDD:227396 262/504 (52%)
HEAT repeat 70..102 CDD:293787 16/31 (52%)
armadillo repeat 108..140 CDD:293788 16/31 (52%)
armadillo repeat 148..184 CDD:293788 19/35 (54%)
armadillo repeat 190..225 CDD:293788 14/39 (36%)
armadillo repeat 359..396 CDD:293788 19/36 (53%)
armadillo repeat 402..437 CDD:293788 9/34 (26%)
kpna2XP_012821932.1 SRP1 20..516 CDD:227396 261/495 (53%)
armadillo repeat 114..146 CDD:293788 16/31 (52%)
armadillo repeat 154..190 CDD:293788 19/35 (54%)
armadillo repeat 196..235 CDD:293788 14/39 (36%)
armadillo repeat 252..277 CDD:293788 14/24 (58%)
armadillo repeat 285..321 CDD:293788 18/35 (51%)
armadillo repeat 327..361 CDD:293788 18/33 (55%)
armadillo repeat 369..403 CDD:293788 17/33 (52%)
armadillo repeat 412..446 CDD:293788 9/34 (26%)
armadillo repeat 459..494 CDD:293788 22/34 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 64 1.000 Domainoid score I9986
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H1708
Inparanoid 1 1.050 505 1.000 Inparanoid score I1309
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 1 1.000 - - oto104478
Panther 1 1.100 - - LDO PTHR23316
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4000
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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