DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pen and Kap-alpha1

DIOPT Version :9

Sequence 1:NP_477041.1 Gene:Pen / 34338 FlyBaseID:FBgn0267727 Length:522 Species:Drosophila melanogaster
Sequence 2:NP_524167.1 Gene:Kap-alpha1 / 40160 FlyBaseID:FBgn0024889 Length:543 Species:Drosophila melanogaster


Alignment Length:547 Identity:233/547 - (42%)
Similarity:326/547 - (59%) Gaps:35/547 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SNSRQGSYKANSINTQDSRMRRHEVTIELRKSKKEDQMFKRRNINDEDLTSPLK---ELN----- 62
            |.|.:..||..::::.:.|.||.||.|:|||:|:|.|:|||||:..|..||...   |.|     
  Fly     2 SASHKQRYKNAALDSTEMRRRREEVGIQLRKNKREQQLFKRRNVVLEPATSSTSAGVESNTDNEQ 66

  Fly    63 -------------GQ------SPVQLSV--DEIVAAMNSEDQERQFLGMQSARKMLSRERNPPID 106
                         ||      |..|.||  :|::..:.|..:..|....|..||:|||:.||||:
  Fly    67 QAADMHMADSSTGGQNEEAAGSGAQPSVINEEMIQMLFSGRENEQLEATQKFRKLLSRDPNPPIE 131

  Fly   107 LMIGHGIVPICIRFLQNTNNSMLQFEAAWALTNIASGTSDQTRCVIEHNAVPHFVALLQSKSMNL 171
            .:|..||||..:.||:|:.|:.|||||||.|||||||||.||:.|||..|||.|:.||.|...::
  Fly   132 EVIQKGIVPQFVTFLRNSANATLQFEAAWTLTNIASGTSQQTKVVIEAGAVPIFIDLLSSPHDDV 196

  Fly   172 AEQAVWALGNIAGDGAAARDIVIHHNVIDGILPLINNETPLSFLRNIVWLMSNLCRNKNPSPPFD 236
            .|||||||||||||....||.::...:::.:|.:::|...::.:||.||.:|||||.|:|...|.
  Fly   197 QEQAVWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITMIRNAVWTLSNLCRGKSPPADFA 261

  Fly   237 QVKRLLPVLSQLLLSQDIQVLADACWALSYVTDDDNTKIQAVVDSDAVPRLVKLLQMDEPSIIVP 301
            ::...||:|::||...|..||:|.|||:.|::|..|.|||||:|:....|||:||...:.::...
  Fly   262 KISHGLPILARLLKYTDADVLSDTCWAIGYLSDGPNDKIQAVIDAGVCRRLVELLLHPQQNVSTA 326

  Fly   302 ALRSVGNIVTGTDQQTDVVIASGGLPRLGLLLQHNKSNIVKEAAWTVSNITAGNQKQIQAVIQAG 366
            |||:|||||||.||||.|::....|..:..||......|.||:.||:|||.|||::||||:|.|.
  Fly   327 ALRAVGNIVTGDDQQTQVILGYNALTCISHLLHSTAETIKKESCWTISNIAAGNREQIQALINAN 391

  Fly   367 IFQQLRTVLEKGDFKAQKEAAWAVTNTTTSGTPEQIVDLIEKYKILKPFIDLLDTKDPRTIKVVQ 431
            ||.||..:::..:||.:||||||:||.|:|||.|||..|:: ...:.|..|.|...|...::|..
  Fly   392 IFPQLMVIMQTAEFKTRKEAAWAITNATSSGTHEQIHYLVQ-VGCVPPMCDFLTVVDSDIVQVAL 455

  Fly   432 TGLSNLFALAEKLGGTEN-LCLMVEEMGGLDKLETLQQHENEEVYKKAYAIIDTYFSNGDDEAEQ 495
            ..|.|:....||.....| ..:.:||.|||||:|.||.|||.::|.|::.||:.||  |::|.:.
  Fly   456 NALENILKAGEKFQTRPNPYAITIEECGGLDKIEYLQAHENRDIYHKSFYIIEQYF--GNEEEDS 518

  Fly   496 ELAPQEVNGALEFNATQPKAPEGGYTF 522
            .:||  |.|..:|.......|..|:.|
  Fly   519 RVAP--VAGTQQFEFDPDNMPSTGFNF 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PenNP_477041.1 SRP1 2..517 CDD:227396 230/540 (43%)
HEAT repeat 70..102 CDD:293787 11/33 (33%)
armadillo repeat 108..140 CDD:293788 18/31 (58%)
armadillo repeat 148..184 CDD:293788 21/35 (60%)
armadillo repeat 190..225 CDD:293788 9/34 (26%)
armadillo repeat 359..396 CDD:293788 20/36 (56%)
armadillo repeat 402..437 CDD:293788 8/34 (24%)
Kap-alpha1NP_524167.1 SRP1 1..543 CDD:227396 232/545 (43%)
IBB 3..116 CDD:280005 34/112 (30%)
ARM 131..252 CDD:237987 61/120 (51%)
armadillo repeat 133..165 CDD:293788 18/31 (58%)
armadillo repeat 173..209 CDD:293788 21/35 (60%)
armadillo repeat 215..250 CDD:293788 9/34 (26%)
ARM 264..378 CDD:237987 52/113 (46%)
armadillo repeat 267..292 CDD:293788 12/24 (50%)
armadillo repeat 300..336 CDD:293788 17/35 (49%)
armadillo repeat 342..376 CDD:293788 11/33 (33%)
ARM 356..461 CDD:237987 47/105 (45%)
armadillo repeat 384..421 CDD:293788 20/36 (56%)
armadillo repeat 427..461 CDD:293788 8/34 (24%)
Arm_3 473..517 CDD:292804 22/45 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45444275
Domainoid 1 1.000 54 1.000 Domainoid score I4139
eggNOG 1 0.900 - - E1_COG5064
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100442
Panther 1 1.100 - - P PTHR23316
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
87.750

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