DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pen and kpna3

DIOPT Version :9

Sequence 1:NP_477041.1 Gene:Pen / 34338 FlyBaseID:FBgn0267727 Length:522 Species:Drosophila melanogaster
Sequence 2:NP_958477.2 Gene:kpna3 / 368640 ZFINID:ZDB-GENE-030616-541 Length:520 Species:Danio rerio


Alignment Length:518 Identity:242/518 - (46%)
Similarity:333/518 - (64%) Gaps:16/518 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 NSRQGSYKANSINTQDSRMRRHEVTIELRKSKKEDQMFKRRNI------NDEDLTSPLKELNGQS 65
            |.|..|:|....:.:..|..|:|||:||||:|:::.:.|:||:      .|.|:.|..|   ||:
Zfish     9 NHRIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDSDFK---GQN 70

  Fly    66 PVQLSVDEIVAAMNSEDQERQFLGMQSARKMLSRERNPPIDLMIGHGIVPICIRFLQNTNNSMLQ 130
               :::|.|:....|::...|...:|:|||:||.:||||||.:|..||:||.::.|:..:|..||
Zfish    71 ---VTLDAILQNATSDNAVVQLSAVQAARKLLSSDRNPPIDDLIKCGILPILVKCLERDDNPSLQ 132

  Fly   131 FEAAWALTNIASGTSDQTRCVIEHNAVPHFVALLQSKSMNLAEQAVWALGNIAGDGAAARDIVIH 195
            |||||||||||||||.||:.|::.||||.|:.||.|...|:.||||||||||.|||...||.||.
Zfish   133 FEAAWALTNIASGTSAQTQAVVKSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVIS 197

  Fly   196 HNVIDGILPLINNETPLSFLRNIVWLMSNLCRNKNPSPPFDQVKRLLPVLSQLLLSQDIQVLADA 260
            ..|:..:|..||...|::||||:.|::.||||||:|.||.:.|:.:||.|..|:...||.:|.|.
Zfish   198 LGVVKPLLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDT 262

  Fly   261 CWALSYVTDDDNTKIQAVVDSDAVPRLVKLLQMDEPSIIVPALRSVGNIVTGTDQQTDVVIASGG 325
            .|||||:||..|.:||.|:||..||.||.||...|..:...|||:|||||||||:||.||:....
Zfish   263 VWALSYLTDGGNEQIQMVIDSGVVPYLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDV 327

  Fly   326 LPRLGLLLQHNKSNIVKEAAWTVSNITAGNQKQIQAVIQAGIFQQLRTVLEKGDFKAQKEAAWAV 390
            |.....||.|.|..|.|||.|.:||||||||:|:||||.||:...:...|.||||..|||||||:
Zfish   328 LTHFSTLLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAI 392

  Fly   391 TNTTTSGTPEQIVDLIEKYKILKPFIDLLDTKDPRTIKVVQTGLSNLFALAEKLGGTENLCLMVE 455
            :|.|.||..:|:..|::: .::.||.:||..||.:.::||..||.|:..:|.:...|  :..::|
Zfish   393 SNLTISGRKDQVEYLVQQ-NVIPPFCNLLSVKDSQVVQVVLDGLKNILIMAGEEAST--IAEIIE 454

  Fly   456 EMGGLDKLETLQQHENEEVYKKAYAIIDTYFSNGDDEAEQELAPQEV-NGALEFNATQPKAPE 517
            |.|||:|:|.|||||||::||.|:.|||.|||..|.:.:..|.|:.. .|...|:::..:|.|
Zfish   455 ECGGLEKIENLQQHENEDIYKLAFEIIDQYFSGDDIDEDPSLIPEATQGGTFNFDSSNLQAKE 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PenNP_477041.1 SRP1 2..517 CDD:227396 241/516 (47%)
HEAT repeat 70..102 CDD:293787 10/31 (32%)
armadillo repeat 108..140 CDD:293788 17/31 (55%)
armadillo repeat 148..184 CDD:293788 21/35 (60%)
armadillo repeat 190..225 CDD:293788 14/34 (41%)
armadillo repeat 359..396 CDD:293788 20/36 (56%)
armadillo repeat 402..437 CDD:293788 11/34 (32%)
kpna3NP_958477.2 SRP1 2..519 CDD:227396 242/518 (47%)
IBB 9..93 CDD:280005 27/89 (30%)
HEAT repeat 73..104 CDD:293787 10/30 (33%)
ARM 108..229 CDD:237987 66/120 (55%)
armadillo repeat 109..142 CDD:293788 17/32 (53%)
armadillo repeat 150..186 CDD:293788 21/35 (60%)
armadillo repeat 192..227 CDD:293788 14/34 (41%)
ARM 242..355 CDD:237987 57/112 (51%)
armadillo repeat 244..269 CDD:293788 12/24 (50%)
armadillo repeat 277..313 CDD:293788 19/35 (54%)
armadillo repeat 319..353 CDD:293788 14/33 (42%)
armadillo repeat 361..395 CDD:293788 18/33 (55%)
ARM 362..486 CDD:237987 58/126 (46%)
armadillo repeat 404..438 CDD:293788 11/34 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.830

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