DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pen and Spag6l

DIOPT Version :10

Sequence 1:NP_477041.1 Gene:Pen / 34338 FlyBaseID:FBgn0287720 Length:522 Species:Drosophila melanogaster
Sequence 2:NP_001030132.1 Gene:Spag6l / 360747 RGDID:1310892 Length:507 Species:Rattus norvegicus


Alignment Length:395 Identity:85/395 - (21%)
Similarity:150/395 - (37%) Gaps:79/395 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 AAWALTNIASGTSDQTRCVIEHNAVPHFVALLQSKSMNLAEQAVWALGNIAGDGAAARDIVIHHN 197
            |||||..||...::.::.|::..|:|..|..:|...:.|...|..||.:|:.........|:...
  Rat   145 AAWALGYIARHNTELSQAVVDAGAIPLLVLCIQEPEIALKRIAASALSDISKHSPELAQTVVDAG 209

  Fly   198 VIDGILPLI-NNETPLSFLRNIVWLMSNLCRNKNPSPPFDQVKRLLPVLSQLLLSQDIQVLADAC 261
            .|..:..:| |.:..|.  |.::..:|.:.::............:.||:...|..:|..|..:||
  Rat   210 AIAHLAQMILNPDAKLK--RQVLSALSQIAKHSVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNAC 272

  Fly   262 WALSYVTDDDNTKIQAVVDSDAVPRLVKLLQMDEPSIIVPALRSVGNIVTGTDQQTDVVIASGGL 326
            ..:..:........|.:|::..|..::..:...:.:|.:|.:..:|.:...::.....||.|.|:
  Rat   273 TLIREIAKHTPELSQLIVNAGGVAAVIDCIGSSKGNIRLPGIMMLGYVAAHSENLAMAVIISKGV 337

  Fly   327 PRLGLLLQHNKSNIVK-EAAWTVSNITAGNQKQIQAVIQAGIFQQLRTVLEKGDFKAQKEAAWAV 390
            |:|.:.|.....:.:| .|||.:..:.....:..:||                          ||
  Rat   338 PQLSICLSEEPEDHIKAAAAWALGQLGRHTPEHARAV--------------------------AV 376

  Fly   391 TNT-----TTSGTPEQIVDLIEKYK--------------ILKPFIDLLDTKDPRTIKVVQTGLSN 436
            |||     :...:.|...||..|.|              .|:||  |.|. .|..:|.|....|.
  Rat   377 TNTLPVLLSLYMSAESSEDLQLKSKKAIKNILQKCTYLPALEPF--LYDA-PPNILKHVVGQFSK 438

  Fly   437 LF---ALAEKL----GGTENLCLMVEEMGGLDKLETLQQHEN-------EEVYKKAYAIIDTYFS 487
            :.   :.|.:|    ||.:.:..:..|.|.|     ||::.|       ||:.:        |:|
  Rat   439 VLPHDSKARRLFVTSGGLKKVQEIKAEPGSL-----LQEYINSINNCYPEEIVR--------YYS 490

  Fly   488 NGDDE 492
            .|..|
  Rat   491 PGYSE 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PenNP_477041.1 SRP1 2..517 CDD:227396 85/395 (22%)
HEAT repeat 70..102 CDD:293787
armadillo repeat 108..140 CDD:293788 5/6 (83%)
armadillo repeat 148..184 CDD:293788 10/35 (29%)
armadillo repeat 190..225 CDD:293788 7/35 (20%)
armadillo repeat 359..396 CDD:293788 7/41 (17%)
armadillo repeat 402..437 CDD:293788 13/48 (27%)
Spag6lNP_001030132.1 SRP1 <34..183 CDD:227396 12/37 (32%)
HEAT repeat 42..73 CDD:293787
HEAT repeat 85..109 CDD:293787
SRP1 112..>423 CDD:227396 64/307 (21%)
armadillo repeat 120..152 CDD:293788 5/6 (83%)
armadillo repeat 160..196 CDD:293788 10/35 (29%)
armadillo repeat 202..236 CDD:293788 7/35 (20%)
armadillo repeat 244..278 CDD:293788 7/33 (21%)
armadillo repeat 328..360 CDD:293788 11/31 (35%)
Blue background indicates that the domain is not in the aligned region.

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