DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trp1 and sec62

DIOPT Version :9

Sequence 1:NP_723510.1 Gene:Trp1 / 34333 FlyBaseID:FBgn0011584 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_001020701.1 Gene:sec62 / 563660 ZFINID:ZDB-GENE-050913-83 Length:394 Species:Danio rerio


Alignment Length:412 Identity:153/412 - (37%)
Similarity:225/412 - (54%) Gaps:70/412 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 QKVDKPSKDEKNVAKWLKKNVKTKKTKFLSHIVEYFTSSKAIDALLKSKFT---EGSNPLFTTRE 94
            |:|.:|:|:||.|||:|:.|..||.|..:.|.|:||.:|||:|.||.||:.   :|...||||||
Zfish    12 QEVSEPTKEEKAVAKYLRFNCPTKSTNMMGHRVDYFVASKAVDCLLDSKWAKAKKGEEALFTTRE 76

  Fly    95 QVIEFLDVMLEHKFFHRAKKVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDE---------KK 150
            .|:::.:.:|:.:|||||.||      ::.|...|.|.:|:|.::|||:|||.:         ||
Zfish    77 SVVDYCNRLLKKQFFHRALKV------MKKKPEKDVKKEKDKEKEKEKEKAKSDSSKEEEKKSKK 135

  Fly   151 DTDPEGDNGQGDGGASGNEKEK--------EKKEKKKRKIRLDMHPEQIFVDGSEAYVWIYDPIP 207
            |.|.:.|:...|     .:|||        :||:..|:|.:|:.|.:|:|:||:|.|.|||||:.
Zfish   136 DKDKKKDSEAAD-----TKKEKNDDSPGSPKKKKDVKKKFKLEPHDDQLFLDGNEVYFWIYDPVH 195

  Fly   208 LHYWIFGFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLVFILALTIVRLIVFIIVWALTGG 272
            ...:..|.||::..:...||||||..:|.||||||:||..|:..||.|.:.|.|:|:|:|.:|||
Zfish   196 FKTFAMGLILVIAVIAATLFPLWPAEMRVGVYYLSVAAGCFVASILLLAVARCILFLIIWLVTGG 260

  Fly   273 KLHFWIFPNLTEDVSFFASFWPLYESNYNSDPNNSSAKTDK-KSKSKDKKKEKESDAEDTAVDAD 336
            :.|||..||||.||.|..||.|||...|....:.|...:|| .|||.|..|.::||:||.:    
Zfish   261 RHHFWFLPNLTADVGFIDSFRPLYTHEYKGPRSGSKKSSDKPDSKSADSSKAQKSDSEDKS---- 321

  Fly   337 GDADGDVDAEVSTLEPEKIELIKEHDTDMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTPR 401
                          :.||.|                   |:.:|||..:.|......|:.:....
Zfish   322 --------------DSEKKE-------------------DEEDEDDNKDMEEGGHQTDTDSDRRE 353

  Fly   402 NSGSDSESSSKDYEIISSSEVQ 423
            :.|| ..|:..|:|:|:..|::
Zfish   354 DEGS-QHSNGNDFEMITREELE 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trp1NP_723510.1 Sec62 105..303 CDD:281790 90/214 (42%)
sec62NP_001020701.1 Sec62 42..293 CDD:281790 111/261 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576437
Domainoid 1 1.000 178 1.000 Domainoid score I3509
eggNOG 1 0.900 - - E1_COG5232
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 267 1.000 Inparanoid score I3023
OMA 1 1.010 - - QHG49369
OrthoDB 1 1.010 - - D1474000at2759
OrthoFinder 1 1.000 - - FOG0005183
OrthoInspector 1 1.000 - - oto40160
orthoMCL 1 0.900 - - OOG6_107760
Panther 1 1.100 - - LDO PTHR12443
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1311
SonicParanoid 1 1.000 - - X4215
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.800

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