DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoYb and ddx17

DIOPT Version :9

Sequence 1:NP_001245959.1 Gene:SoYb / 34331 FlyBaseID:FBgn0051755 Length:1476 Species:Drosophila melanogaster
Sequence 2:NP_001313320.1 Gene:ddx17 / 556764 ZFINID:ZDB-GENE-030131-18 Length:671 Species:Danio rerio


Alignment Length:615 Identity:105/615 - (17%)
Similarity:219/615 - (35%) Gaps:160/615 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   334 SSYQQKNTDSSTLSGPRNLASSSTNSNSNVRKSMTLFKSSGAHLTTSLSVPLTENCTNQSNNRTV 398
            |||..::.|.....|||      ..|:..|......|.:.|..|                  |..
Zfish     5 SSYGDRDRDRGRDRGPR------FGSSRAVPPPPKKFGNPGDRL------------------RKK 45

  Fly   399 VFSMDKMEQIFNDMLGKNP-----SERSVQKNRSQMPNSNVSTTKRCVEKMHVCRSENMGDRKPS 458
            .:.:|::.:...:...:||     |:..|::.|                            ||  
Zfish    46 KWDLDQLPKFEKNFYNENPEVHHMSQYDVEEYR----------------------------RK-- 80

  Fly   459 VCLKHLVLAHSPEPVNPVTSYKELPLGNTILNAMDDLNFQTPLPTQIYAWPHLVNRGSLVLVNPS 523
               :.:.:..|..| .|||::.:......:::.:...||:.|...|...:|..::...:|.:..:
Zfish    81 ---REITVRGSGCP-KPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQT 141

  Fly   524 GTGRSWSYLPVICSSVLSSFENVTSNLDTRIAPGPLAILIVDSVENAKKLASHCEFLMKDFNTQN 588
            |:|::.:||       |.:..::..........||:.:::..:    ::||...:.:..|:. ::
Zfish   142 GSGKTLAYL-------LPAIVHINHQPYLERGDGPICLVLAPT----RELAQQVQQVAFDYG-KS 194

  Fly   589 LKVVNTHAH-------SMMDVYMMLLNSCGVLVTTLAHLNNILSNELPLVNPTRLEFIIFDDYDR 646
            .::.:|..:       .:.|    |.....:.:.|...|.:.|  |:...|..|..:::.|:.||
Zfish   195 SRIKSTCVYGGAPKGPQIRD----LERGVEICIATPGRLIDFL--EVGKTNLRRCTYLVLDEADR 253

  Fly   647 KRLDNAELLKEVFQKVNSIGGLSKQLVLVAQQWHSERFQKLLNRTTKP---LILFGDFLEAALYG 708
             .||.               |...|:..:..|...:| |.|:...|.|   ..|..|||:.  |.
Zfish   254 -MLDM---------------GFEPQIRKIVDQIRPDR-QTLMWSATWPKEVRQLAEDFLQD--YV 299

  Fly   709 GLKFNVTLRSSALKARQLLDILAEQDGSKK--------------RTLIYCKNQMELEELSAILIE 759
            .:.......|:.....|::|:..|.:...|              :|:|:.:.:...:||:..:..
Zfish   300 QINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDELTRRMRR 364

  Fly   760 AG--LQCVDISKAQNQ---------SPNRLMLVDDSQVRKQLPVRNIQLLIHFSLPESWLRFSRR 813
            .|  ..|:...|:|.:         |....:|:......:.|.|.:::.:|::..|.|...:..|
Zfish   365 DGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 429

  Fly   814 FHTMADNIRNLFTKPIGRGQDLITYILMDENNAKEWPRIMKFLQDHGLTTQSMPDSEQQLDNT-- 876
            ....|        :...:|   ..|......|.::...:::.|::   ..|::.....||.:|  
Zfish   430 IGRTA--------RSTNKG---TAYTFFTPGNLRQARDLVRVLEE---ARQAINPKLLQLVDTGR 480

  Fly   877 ------LPYCPYKLSNGNCN---RNQCNKR 897
                  :.|.....|:.|.|   :::|::|
Zfish   481 GGGGGRMRYRGNNSSSNNPNLMYQDECDRR 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoYbNP_001245959.1 TUDOR 7..115 CDD:278965
SrmB 475..877 CDD:223587 76/444 (17%)
P-loop_NTPase 480..>646 CDD:304359 26/172 (15%)
TUDOR 927..1043 CDD:278965
ddx17NP_001313320.1 SrmB 68..574 CDD:223587 89/528 (17%)
DEADc 97..302 CDD:238167 43/241 (18%)
HELICc 313..445 CDD:238034 23/142 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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