DRSC/TRiP Functional Genomics Resources

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Protein Alignment bib and RD28

DIOPT Version :9

Sequence 1:NP_001260313.1 Gene:bib / 34330 FlyBaseID:FBgn0000180 Length:737 Species:Drosophila melanogaster
Sequence 2:NP_181255.1 Gene:RD28 / 818294 AraportID:AT2G37180 Length:285 Species:Arabidopsis thaliana


Alignment Length:254 Identity:77/254 - (30%)
Similarity:118/254 - (46%) Gaps:44/254 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 EIRTLEFWRSIISECLASFMYVFI----VCG-------AAAGV---GVGASVSSVLLATALASGL 108
            |:.....:|::|:|.:|:.:::::    |.|       .|.||   |||      :|..|.|.|.
plant    29 ELTKWSLYRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVG------ILGIAWAFGG 87

  Fly   109 AMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALL------YGVTV 167
            .:..|..|...|||.|||||||..|.:.|.:|.|||.:|:.|||.|.|.|...:      :.|..
plant    88 MIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNY 152

  Fly   168 PGYQGNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTDPMKKFMGN-----SAASIGCAYS 227
            .|....|....:....|||      |.|.||::|...|.:|||.:....:     :...||.|..
plant   153 GGGANFLADGYNTGTGLAA------EIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVF 211

  Fly   228 ACCFVSMPY----LNPARSLGPSFVLNK---WDSHWVYWFGPLVGGMASGLVYEYIFNS 279
            .....::|.    :|||||.|.:.:.||   ||.||::|.||.:|...:...::::..:
plant   212 MVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRA 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bibNP_001260313.1 MIP 58..273 CDD:278651 77/246 (31%)
RD28NP_181255.1 MIP 29..264 CDD:395174 77/246 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0580
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1152704at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.780

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