DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dref and zbed1

DIOPT Version :9

Sequence 1:NP_001260311.1 Gene:Dref / 34328 FlyBaseID:FBgn0015664 Length:709 Species:Drosophila melanogaster
Sequence 2:XP_004911791.1 Gene:zbed1 / 733978 XenbaseID:XB-GENE-6084277 Length:693 Species:Xenopus tropicalis


Alignment Length:775 Identity:150/775 - (19%)
Similarity:270/775 - (34%) Gaps:244/775 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PKMKSVYWRYFGFPSNDNNEVITKQNVVCIKCHKVLTNHGNTTNLRAHLQHRHKDLFKELCQEHD 95
            |:.||..|:||||.:|....::..:.:.|..|...:...|||:||..||:..|.|   |.|    
 Frog    19 PRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNTSNLSYHLEKNHPD---EYC---- 76

  Fly    96 IHVPPRKTPRNVSHPPLSKRNVSSRRVKLEFINNRNHDNASDDELDEAAVATAAMQAEEDASSQT 160
                                         ||:.       |:.|....|.|||..:.:.: |||.
 Frog    77 -----------------------------EFVK-------SNTEQMREAFATAFSKLKPE-SSQQ 104

  Fly   161 MLYETMVPFTYDEAENLVEEEERLVMEPKYGRKRKVATPSSALMHGRVIKHEEGGYAAVANIANL 225
            ::.||::.......||                |:.:...||.:   .:|.  ||.|.        
 Frog   105 VVQETLIMKNTQSFEN----------------KKHLELTSSVI---SLIC--EGMYP-------- 140

  Fly   226 AEALTDIVIKD-LRNVDSLYDAGFGEFLRQVLGNSAAMPEPHKIDSLINEMHASKFLEIGEITRD 289
            |..|.:...|: |:..:..|:....:::     .|..:||.:   :.|.||          :.:|
 Frog   141 ASILDEPTFKNLLKTAEPRYEVPMRKYI-----CSRVLPEKY---NAIREM----------VLKD 187

  Fly   290 FTSEKPFSLAFEMWVNVEQRR-FLSIFHHFL----------------------DEETHSVRGMLY 331
            .|......::.:||.:|.|.| ::::..:|:                      :.:..::..:||
 Frog   188 LTDILWCGISTDMWKSVTQNRSYVTLSVYFMSTGPSNCLSVNSRCLKTFEVPEENKAETITRVLY 252

  Fly   332 AT-VEYNDYIVFDDLLTDF---YLANCTLAIINYDEEEDLLHTYLREKNIPISL-CYVSVIDKCL 391
            .| :|:..........|||   .:..|:|.                  :||:.: |.....|..:
 Frog   253 ETFIEWGISAKVFGATTDFSKDIVKACSLL------------------DIPVDMPCLGQTFDMGI 299

  Fly   392 RRVFEIEEVATLLEQVKDLMQRHSTEIASKVSEVPMPTYNEHFPWTLYETLKFFAESISW----- 451
            ::.|::.::::||.:.:.|::.......:.............||..|      .::.:||     
 Frog   300 QQAFQLPKLSSLLSRCRKLVEYFQQSSIAMYMLCEKQKQQNLFPCML------ISDRVSWWGSTL 358

  Fly   452 -----------------SEDMD--HLVISA----------------KTVTEALSALVIALDTLRG 481
                             .||.:  ||::.|                |.|.|.||.          
 Frog   359 VMLQRLKEQQFTIAGVLVEDSNNHHLMLEASEWNTIEGLVDLLQPFKQVAEMLSV---------- 413

  Fly   482 EDIPLCSMLSPITSKILIKKLGIAEQDDPLMMNLKRTISSVLQAHVISNDN----LTAAALLDPR 542
            ...|..||:.|:...:|...|.|.|.|...:...|..|:.||.:.......    |..|..||||
 Frog   414 SKYPTISMVKPLLHMLLNTSLNIKETDPKEISMAKEVIAKVLSSTYQQTPEIDMFLNVATFLDPR 478

  Fly   543 FHRLTTIDNLERTV---RMLTHKYNINFGGVGEGESNEVAATSSVVAIKSEP---RVVDGSAPKK 601
            :.:|..:...||..   |::......    :.:|:.| :.....|..|..||   ::...:.|..
 Frog   479 YKKLPFLSAFERAQVENRVIEEAKCF----IDKGKEN-IKNEEKVFIISEEPPMKKMASSTPPPT 538

  Fly   602 LGLKLLFDSNEIPNPPKRDAD---SSVESDLKRYRNEVVVQLDESPIEWWLKMGHIYGTLRDLAS 663
            ..:..:.......:....|.:   :.|..:|..::::.|:.|:|.|::||          .|..:
 Frog   539 SSINSMLAEIFCQSGSSEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWW----------SDRLT 593

  Fly   664 LYHSVPGVV--------TLSFKKALRDQIYDFN--------KRFMLTGSHIDAILFLHHH 707
            |:..:|.|:        |..|.:.|      ||        ||..|..:|:|..:||:.:
 Frog   594 LFPLLPKVLQKYWCIRPTRVFPERL------FNSSANVVNSKRNRLAPAHVDEQIFLYEN 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrefNP_001260311.1 zf-BED 35..84 CDD:280965 16/48 (33%)
zbed1XP_004911791.1 zf-BED 23..72 CDD:397159 16/48 (33%)
DUF4413 412..514 CDD:405121 26/116 (22%)
Dimer_Tnp_hAT 568..647 CDD:399013 23/94 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223749at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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