DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dref and Zbed4

DIOPT Version :9

Sequence 1:NP_001260311.1 Gene:Dref / 34328 FlyBaseID:FBgn0015664 Length:709 Species:Drosophila melanogaster
Sequence 2:NP_001128272.1 Gene:Zbed4 / 315211 RGDID:1305949 Length:1170 Species:Rattus norvegicus


Alignment Length:707 Identity:138/707 - (19%)
Similarity:239/707 - (33%) Gaps:207/707 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KMKSVYWRYFGFPSNDNNEVITKQNVVCIKCHKVL------TNHGNTTNLRAHLQHRHKDLFKEL 90
            |..|..|.:|...|.|:.:      |||:.|.:.:      ||.|.:..|| |||..|..:.|..
  Rat   559 KKTSKLWNHFSICSADSTK------VVCLHCGRTISRGKKPTNLGTSCLLR-HLQRFHGHVLKND 616

  Fly    91 CQEHDI-HVPPRKTPRNV-----------------SHPPLSK-RNVSSRRVKLEFINNRNHDNAS 136
            ..|..: |.|..:.|..:                 |||...| .::.:..:.|:.......||..
  Rat   617 VSEATLPHSPGIRRPLGMELSGASSLRDSTEKFYDSHPVAKKITSLIAEMIALDLQPYSLVDNVG 681

  Fly   137 DDELDEAAVATAAMQAEEDASSQTMLYETMVPFTYDEAENLVEEEERLVMEPKYGRKRKVATPSS 201
            .:.|.|      .::.:....|.:....|.:|..||..:.::                       
  Rat   682 FNRLLE------YLKPQYSLPSPSYFSRTAIPGMYDNVKQII----------------------- 717

  Fly   202 ALMHGRVIKHEEGGY----AAVANIANLAEALTDIVIKDLRNVDSLYDAGFGEFLRQVLGNSAAM 262
             :.|   :|..|.|.    :.:...:...|.||             ..|.:..|        |:.
  Rat   718 -MSH---LKEAESGVVHFTSGIWMSSQTREYLT-------------LTAHWVTF--------ASA 757

  Fly   263 PEPHKIDSLINEMHASKFLEIGEITRDFTS---EKPFSLAFEMWVNVEQRRFLSIFHHFLDEETH 324
            ..||     ..:.|.|..|::.:|..|::.   :|.....:|.||.                   
  Rat   758 VRPH-----CEDHHCSALLDVSQIDCDYSGNSIQKQLECWWEAWVT------------------- 798

  Fly   325 SVRGMLYATVEYNDYIVFDDLLTDFYLANCTLAIINYDEEEDLLHTYLREKNIPISLCYVSVIDK 389
            |:...:..||            ||    |.::..:..:.|...:..:....|:     .||...|
  Rat   799 SIGLQIGITV------------TD----NPSIGKMLSEGEHSSVQCFSHTVNL-----IVSEAIK 842

  Fly   390 CLRRVFEIEEVATLL-----------EQVKDLMQRHSTEIASKVSEVPMP-TYNEHFPWTLYETL 442
            ..|.|..:..:|..|           |::.:|.:.:.......:.:||.. :.:.|....|.|..
  Rat   843 SQRMVQNLLSIARKLCERVHRSPRAREKLAELQREYELPQHQLIQDVPSKWSTSFHMLERLIEQK 907

  Fly   443 KF---------FAESIS---WS--EDMDHLVISAKTVTEALSALVIALDTLRGEDIPLCSMLSPI 493
            :.         |.|.||   |.  :.:.|::......:..:||.:..|..:    ||:..:||..
  Rat   908 RAVNEVSIECNFRELISCDQWEVMQSVCHVLRPFDAASREMSAHMSTLSQV----IPMIHILSRK 968

  Fly   494 TSKILIKKLGIAEQDDPLMMNLKRTISSVLQAHVISNDNLTAAALLDPRFH-RLTTIDNLERTVR 557
            ...:..:.:||    |.::.:||..::|.|.| .:.:.....|.|||||:. .|.|.:..|:..:
  Rat   969 VEMLFGETMGI----DTMLKSLKEAMASRLSA-TLHDPRYIFATLLDPRYKASLFTEEEAEQYRQ 1028

  Fly   558 MLTHKYNINFGGVGEGESNEVAATSSVVAIKSEPRVVDGSAPKKLGLKLLFDSNEIPNPPKRDAD 622
            .|..:..|.     ...|.:.||::...:         ||..|..|.:   :|.....|.|||..
  Rat  1029 DLIRELEIL-----NSTSEDTAASNGCDS---------GSPLKDTGTE---ESLWSLAPIKRDQR 1076

  Fly   623 SSVESDL-KRYRNEVVVQLDESPIEWW-LKMGHIYGTLRDLASLYHSVPGVVTLSFK 677
            ..:..|: ..|..|.|::....|:.:| ||..              |.||:.||:.:
  Rat  1077 EKLPEDMVLAYLEEEVLEHSCDPLAYWNLKRS--------------SWPGLSTLAVR 1119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrefNP_001260311.1 zf-BED 35..84 CDD:280965 17/54 (31%)
Zbed4NP_001128272.1 zf-BED 119..167 CDD:280965
zf-BED 289..337 CDD:280965
zf-BED 461..508 CDD:280965
zf-BED 562..609 CDD:280965 17/53 (32%)
Dimer_Tnp_hAT 1087..1163 CDD:283379 12/47 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223749at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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