DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dref and bed-3

DIOPT Version :9

Sequence 1:NP_001260311.1 Gene:Dref / 34328 FlyBaseID:FBgn0015664 Length:709 Species:Drosophila melanogaster
Sequence 2:NP_501785.1 Gene:bed-3 / 184940 WormBaseID:WBGene00009133 Length:599 Species:Caenorhabditis elegans


Alignment Length:496 Identity:92/496 - (18%)
Similarity:168/496 - (33%) Gaps:138/496 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 WRYFGFPSNDNNEVIT-KQNVVCIKCH-KVLTNHGNTTNLRAHLQHRHKDLFKELCQEHDIHVPP 100
            ||||       :|:.| :|...|..|. |:...:.:||.:..||:..|       .||:.:....
 Worm   129 WRYF-------DELPTIEQAAECRICRKKIKATNSSTTGMIRHLRSCH-------VQEYQLVQEA 179

  Fly   101 RKTPRNVSHPPLSKRNVSSRRVKLEFINNRNHDNA--------SDDELDEAAVATAAMQAEEDAS 157
            |:....|      |....:|...|..:|.:...|.        .:.:.:.....:|:..|.:.||
 Worm   180 RQNSMIV------KMEEKARAKLLREMNEKVITNGIENTPIVKKESQTESQKSPSASSSASDTAS 238

  Fly   158 SQTMLYETMVPFTYDEAENLVEEEERLVMEPKYGRKRKVATPSSALMHGRVIKHEEGGYAAVANI 222
            |.:..:.:..|        |:.....:.::|.     ...|||:::::....:::......:...
 Worm   239 SASSSHFSTNP--------LIGLPAPVAIKPP-----APPTPSNSILNLSQSQNQCQNQNPMFQS 290

  Fly   223 ANLAEALTDIVIKDLRNVDSLYDAGFGEFLRQVLGNSAAMPEPHKIDSLINEMHASKFLEIGEIT 287
            .|:....||:..:||....|          |.:|         |:...|..:|.           
 Worm   291 QNIKNEPTDVEEEDLEQKRS----------RDIL---------HRPSDLGTKMF----------- 325

  Fly   288 RDFTSEKPFSL--AFEMWVNVEQRRFLSIFHHFLDEETHSVRGMLYATVEYNDYIVFDDLLTDFY 350
              |:|.:.|:|  ||.....:|..:|....     |:.|.:. |..|.:          ||.|  
 Worm   326 --FSSPRTFNLTSAFSSITPLEDHKFQKKI-----EDDHKIH-MQIALM----------LLLD-- 370

  Fly   351 LANCTLAIINYDEEEDLLHTYLREKNIPISLCYVSVIDKCLRRVFEIEEVATLLEQVKDLMQR-- 413
              .....||:......|....|.|.::|..            .||:...|..||.|:|..::.  
 Worm   371 --QQPCQIIDRPGIRSLFKFVLPEYHMPSG------------DVFQATIVPQLLNQMKQQIEALV 421

  Fly   414 HSTEIASKVSEVPMPTYNEHFPWTLYETL-----------------KFFAESISWSEDM----DH 457
            |:   :|.:|.:|..........:.||.:                 :...|.:...|::    |.
 Worm   422 HN---SSSLSSIPDQVMTSSSATSSYEDVSVNESQMAGPNVGDEEEEIMEEEVEEDENVEIEDDT 483

  Fly   458 LVISAKTVTEALSALVIALDTLRGEDIP---LCSMLSPITS 495
            ...|:...|:...|:...:..:..:..|   |.|:||.:|:
 Worm   484 SSASSSIDTDTCDAMASFIHFIGNDAFPHDELISLLSVVTN 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrefNP_001260311.1 zf-BED 35..84 CDD:280965 14/47 (30%)
bed-3NP_501785.1 zf-BED 126..169 CDD:280965 14/46 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1121
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223749at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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