DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dref and zbed4

DIOPT Version :9

Sequence 1:NP_001260311.1 Gene:Dref / 34328 FlyBaseID:FBgn0015664 Length:709 Species:Drosophila melanogaster
Sequence 2:XP_002932232.1 Gene:zbed4 / 100270676 XenbaseID:XB-GENE-6076969 Length:1148 Species:Xenopus tropicalis


Alignment Length:804 Identity:152/804 - (18%)
Similarity:284/804 - (35%) Gaps:223/804 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 SKLYSPKMKSVYWRYFGFPSNDNNEVITKQNVVCIKCHKVLTNHG-----NTTNLRAHLQHRHKD 85
            ||....::||..|.:|...:.||      |..||..| ..:.:.|     .|:.|..||..||.:
 Frog   432 SKKCMKRLKSEVWHHFSLSTTDN------QKAVCKYC-SCMISRGKKGDLGTSCLMRHLYRRHPE 489

  Fly    86 LFKELCQEHDIHVPPRKTPRNVSHPPLSKRNVSSRRVKLEFINNRNHDNA--------------- 135
            :   :..:..|.:....:|    :..|:....||:..:|..:   ||||.               
 Frog   490 V---ILNQKKIDISLANSP----YATLASAECSSKMTELTIV---NHDNQIVFPTNSKKTSKLWN 544

  Fly   136 --SDDELDEAAV------------------ATAAMQAEEDASSQTMLYETMVPFTYDEAENLVEE 180
              |....|...|                  .|:.:..........:|....|..|...|::....
 Frog   545 HFSICSADSTKVICMHCGRTISRGKKPTNLGTSCLLRHLQRFHSNVLQNNSVSETLRPADSQTPV 609

  Fly   181 EERLVME------PKYGRKRKVATPSSALMHGRVIKHEEGGYAAVANIANLAEALTDIVIKDLRN 239
            ...|...      .|:.....||...::|                         :.:::..||:.
 Frog   610 NTELAASSFEDTTDKFSDSHPVAKKITSL-------------------------IAEMIALDLQP 649

  Fly   240 VDSLYDAGFGEFLRQV----------LGNSAAMPEPHKIDSLINEMHASKFLEIGEITRDFTSEK 294
            ...:.:.||...|..:          ..:..|:|:.::....|...|. |..|.|.|  .||:  
 Frog   650 YSFVNNVGFNRLLEYLQPQYSLPSASYFSRTAIPDMYENVKQIIVSHL-KEAESGVI--HFTA-- 709

  Fly   295 PFSLAFEMWVNVEQRRFLSIFHHFLDEET--------HSVRGMLYAT---VEYNDYIVFDDL--L 346
                  .:|::.:.|.:|::..|::..|:        |....:|:.:   .:|||..|...|  |
 Frog   710 ------GIWMSSQTREYLTLTAHWVTFESSFRPHCENHHCSALLHVSQIDCDYNDVSVQKHLEYL 768

  Fly   347 TDFYLANCTLAI-INYDEEEDLLHTYLREKNIPISLCYVSVIDKCLRRVFEIEE-VATLLEQVKD 409
            .:.::|:|.|.| |...:...:..| |.|.......|:...:|..:....:.:. |..||...:.
 Frog   769 WESWIASCGLQIGITVTDNHSIAKT-LNESEHSSVQCFGHTVDLIVNEAIKSQRMVQNLLSIARK 832

  Fly   410 LMQR--HSTEIASKVSEV----PMPTYN--EHFP--W-TLYETLK----------------FFAE 447
            :.:|  .||:...|::|:    .:|.::  :..|  | |.:..|.                .|.|
 Frog   833 ICERVHRSTKAKEKLAELQKEYDLPQHHLIQDVPSKWNTSFHMLDRLIEQKRAIDEMSIECSFRE 897

  Fly   448 SIS---WSEDMDHLVISAKTVTEALSALVIALDTLRGEDIPLCSMLSPITSKILIKKLGIAEQDD 509
            .||   | |.|..:..:.|....|...:.:.:.|| .:.||:..:|:.....:..:.:||    |
 Frog   898 LISCDQW-EVMQSVCHALKPFEAASREMSMHMATL-SQVIPMIHILNRKIEMLFEETMGI----D 956

  Fly   510 PLMMNLKRTISSVLQAHVISNDNLTAAALLDPRFH-RLTTIDNLERTVRMLTHKYNINFGGVGEG 573
            .::.:||..:...|.: .:.:.....|.|||||:. .|.:.:..|...:.|..:..|        
 Frog   957 TMLKSLKEAMVCRLSS-TLHDPRYIFATLLDPRYKASLFSEEEAEEYKQGLIRELEI-------- 1012

  Fly   574 ESNEVAATSSVVAIKSEPRVVDG----SAPKKLGLKLLFDSNEIPNPPKRDADSSVESDLKR--- 631
                :::||      .:..:::|    |:||..|.:.::               |:.:::||   
 Frog  1013 ----LSSTS------DDALILNGCNKSSSPKSNGEENIW---------------SLMANIKRSKA 1052

  Fly   632 ------------YRNEVVVQLDESPIEWWLKMGHIYGTLRDLASLYHSVPGVVTLS---FKKALR 681
                        |..|.|::.:..|:.:|......:..|..||..:...|..:..|   |..|  
 Frog  1053 LKEKLPEDIVFAYLEEEVLEHNCDPLTYWNLKKSAWPVLAKLAVRFLGCPPSIIPSERLFNTA-- 1115

  Fly   682 DQIYDFNK-RFMLTGSHIDAILFL 704
            ::..:||: |.|:  .|.:.::||
 Frog  1116 NENCNFNQNRLMM--EHFEQLIFL 1137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrefNP_001260311.1 zf-BED 35..84 CDD:280965 15/53 (28%)
zbed4XP_002932232.1 zf-BED 105..152 CDD:335142
zf-BED 270..316 CDD:335142
zf-BED 442..488 CDD:335142 14/52 (27%)
zf-BED 541..588 CDD:335142 4/46 (9%)
Dimer_Tnp_hAT 1065..1141 CDD:368565 19/77 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223749at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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