DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4709 and Lime1

DIOPT Version :10

Sequence 1:NP_609331.1 Gene:CG4709 / 34324 FlyBaseID:FBgn0032169 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_076173.1 Gene:Lime1 / 72699 MGIID:1919949 Length:269 Species:Mus musculus


Alignment Length:112 Identity:26/112 - (23%)
Similarity:44/112 - (39%) Gaps:23/112 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   409 LGPG---------ESTQQG-EQVTKKAKTNELQQHSTKTLNVETVRIADEIRRKQRDMAKVKQSL 463
            ||||         :.|:|| :::.:|||.....|     ::|...|:.   :.|:||...|...|
Mouse   169 LGPGAEYACIQKHKGTEQGCQELQQKAKVIPATQ-----MDVLYSRVC---KPKRRDPRPVTDQL 225

  Fly   464 DRNSGDAQLQKRLQVQMQSHKQELATLQAQERSLSKEQQTRKSKNKM 510
            :...|...|.....|:     .|...|:.|:......:...:|..:|
Mouse   226 NLQDGRTSLPLGSDVE-----YEAINLRGQDMKQGPLENVYESIKEM 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4709NP_609331.1 ZnF_C3H1 155..176 CDD:214632
G-patch 312..355 CDD:396249
Lime1NP_076173.1 LIME1 27..266 CDD:464652 25/109 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 102..133
Interaction with GRB2 137..140
Interaction with CSK. /evidence=ECO:0000250 175..178 0/2 (0%)
Interaction with CSK. /evidence=ECO:0000250 207..210 0/2 (0%)
Interaction with LCK and PIK3R1. /evidence=ECO:0000269|PubMed:14610044 242..245 1/2 (50%)
Interaction with LCK, PLCG2 and PIK3R1. /evidence=ECO:0000269|PubMed:14610044, ECO:0000269|PubMed:16249387 261..264 0/2 (0%)
Blue background indicates that the domain is not in the aligned region.

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