DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4709 and Lime1

DIOPT Version :9

Sequence 1:NP_001285788.1 Gene:CG4709 / 34324 FlyBaseID:FBgn0032169 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_001102084.1 Gene:Lime1 / 362289 RGDID:1562795 Length:269 Species:Rattus norvegicus


Alignment Length:112 Identity:27/112 - (24%)
Similarity:43/112 - (38%) Gaps:23/112 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   409 LGPG---------ESTQQG-EQVTKKAKTNELQQHSTKTLNVETVRIADEIRRKQRDMAKVKQSL 463
            ||||         :.|:|| ::..:|||.....|     ::|...|:.   :.|:||.......|
  Rat   169 LGPGAEYACIQKHKGTEQGCQESQQKAKVTPATQ-----MDVLYSRVC---KPKRRDPRPDTDQL 225

  Fly   464 DRNSGDAQLQKRLQVQMQSHKQELATLQAQERSLSKEQQTRKSKNKM 510
            :...|...|.....|     |.|..||:.|:......:...:|..:|
  Rat   226 NLQDGRTILALGNDV-----KYEAITLRGQDMKQGTLENVYESIKEM 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4709NP_001285788.1 ZnF_C3H1 155..176 CDD:214632
G-patch 312..355 CDD:279867
Lime1NP_001102084.1 LIME1 27..266 CDD:405918 26/109 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342655
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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