DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4709 and Lime1

DIOPT Version :10

Sequence 1:NP_609331.1 Gene:CG4709 / 34324 FlyBaseID:FBgn0032169 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_001102084.1 Gene:Lime1 / 362289 RGDID:1562795 Length:269 Species:Rattus norvegicus


Alignment Length:112 Identity:27/112 - (24%)
Similarity:43/112 - (38%) Gaps:23/112 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   409 LGPG---------ESTQQG-EQVTKKAKTNELQQHSTKTLNVETVRIADEIRRKQRDMAKVKQSL 463
            ||||         :.|:|| ::..:|||.....|     ::|...|:.   :.|:||.......|
  Rat   169 LGPGAEYACIQKHKGTEQGCQESQQKAKVTPATQ-----MDVLYSRVC---KPKRRDPRPDTDQL 225

  Fly   464 DRNSGDAQLQKRLQVQMQSHKQELATLQAQERSLSKEQQTRKSKNKM 510
            :...|...|.....|     |.|..||:.|:......:...:|..:|
  Rat   226 NLQDGRTILALGNDV-----KYEAITLRGQDMKQGTLENVYESIKEM 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4709NP_609331.1 ZnF_C3H1 155..176 CDD:214632
G-patch 312..355 CDD:396249
Lime1NP_001102084.1 LIME1 27..266 CDD:464652 26/109 (24%)
Blue background indicates that the domain is not in the aligned region.

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