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Protein Alignment CG4709 and Lime1
DIOPT Version :9
Sequence 1: | NP_001285788.1 |
Gene: | CG4709 / 34324 |
FlyBaseID: | FBgn0032169 |
Length: | 513 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001102084.1 |
Gene: | Lime1 / 362289 |
RGDID: | 1562795 |
Length: | 269 |
Species: | Rattus norvegicus |
Alignment Length: | 112 |
Identity: | 27/112 - (24%) |
Similarity: | 43/112 - (38%) |
Gaps: | 23/112 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 409 LGPG---------ESTQQG-EQVTKKAKTNELQQHSTKTLNVETVRIADEIRRKQRDMAKVKQSL 463
|||| :.|:|| ::..:|||.....| ::|...|:. :.|:||.......|
Rat 169 LGPGAEYACIQKHKGTEQGCQESQQKAKVTPATQ-----MDVLYSRVC---KPKRRDPRPDTDQL 225
Fly 464 DRNSGDAQLQKRLQVQMQSHKQELATLQAQERSLSKEQQTRKSKNKM 510
:...|...|.....| |.|..||:.|:......:...:|..:|
Rat 226 NLQDGRTILALGNDV-----KYEAITLRGQDMKQGTLENVYESIKEM 267
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
CG4709 | NP_001285788.1 |
ZnF_C3H1 |
155..176 |
CDD:214632 |
|
G-patch |
312..355 |
CDD:279867 |
|
Lime1 | NP_001102084.1 |
LIME1 |
27..266 |
CDD:405918 |
26/109 (24%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
1 |
0.930 |
- |
- |
|
C166342655 |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.930 |
|
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