DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5853 and ABCG28

DIOPT Version :9

Sequence 1:NP_001260309.1 Gene:CG5853 / 34322 FlyBaseID:FBgn0032167 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_200882.4 Gene:ABCG28 / 836195 AraportID:AT5G60740 Length:1109 Species:Arabidopsis thaliana


Alignment Length:605 Identity:158/605 - (26%)
Similarity:274/605 - (45%) Gaps:129/605 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 REPVDMEFKELSLTVKLGFNRGSKEILHNVCGKFPGSQLIAIMGPSGAGKSTLLDALSGFKTTG- 163
            |..:::.||:||:|:| |.|   |.::..|.||....::.|:||||||||:|.|.||:| |..| 
plant   494 RPMIEVAFKDLSITLK-GKN---KHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTG-KAPGC 553

  Fly   164 -VDGSILLNGRRRDLPSFRRMSCYITQDDRLQPLLTVNENMHIAADLKLGQTVSYEEKESRIEDI 227
             :.|.||:||:...:.|::::..::.|||.:...|||.||:..:|..:|...:...||...:|.:
plant   554 IMTGMILVNGKVESIQSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLPADLPKPEKVLVVERV 618

  Fly   228 LLLLGLYNHDQTLT-----MRLSGGQKKRLSIAMELINNPTVMFLDEPTTGLDSSSCTKVLELLK 287
            :..|||.:...:|.     ..:||||:||:::.:|::..|:::.|||||:||||||...:|..|:
plant   619 IESLGLQHVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALR 683

  Fly   288 KLTSQGRTIICTIHQPTAKLFQIFDQVYVLSAGNCV-YQGSTQKLVPFLQSVDLPCPMYHNPADY 351
            :...:|..|...:|||:..||::||.:.:|:.|..: |||..:|:..:..|:.:..|...||.||
plant   684 REALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLICYQGPVKKVEEYFSSLGIVVPERVNPPDY 748

  Fly   352 IIELACGEYGYDKVDTLKLATENGSCLTWFHNPSAVLRAEVLMRKYPIPK--------KTKSRSL 408
            .|::..|        .||.:|.:|  :|:...|...:    |...||:|.        ...|.|.
plant   749 YIDILEG--------ILKPSTSSG--VTYKQLPVRWM----LHNGYPVPMDMLKSIEGMASSASG 799

  Fly   409 EDTSYSNQC--SVLLRRGF-------------IKAKRDTTMTHLRIGVNIAVAALFGAMYDH--- 455
            |::::....  ||:...|.             ::.|:|....:.....:::...:.|....:   
plant   800 ENSAHGGSAHGSVVGDDGTSFAGEFWQDVKANVEIKKDNLQNNFSSSGDLSEREVPGVYQQYRYF 864

  Fly   456 TGREGSR--------VLDNYNLLFAIL---------------MHHSMTTMMLTVL-------TFP 490
            .||.|.:        .:|...||.|.:               |.::.|.:.:::|       :|.
plant   865 LGRLGKQRLREARTLAVDYLILLLAGICLGTLAKVSDETFGAMGYTYTVIAVSLLCKITALRSFS 929

  Fly   491 MDISILIKEHFNRW------YSLKAYYTAMTLVDLPISIISCFFFTVIVYLWSYQPMEWIRFFMF 549
            :|     |.|:  |      .|..||:.|...||         .|..||     :|:.::..|.|
plant   930 LD-----KLHY--WRESRAGMSSLAYFLAKDTVD---------HFNTIV-----KPLVYLSMFYF 973

  Fly   550 FS-------------ISLLTVFVGHSFGLMIGAWFDVVNGTFLAPVLTIPMMMFAGFGVTLRDLP 601
            |:             |.|:....|.::.|.|  .|:.......:.:|.:.:.:.|......:.:.
plant   974 FNNPRSTVTDNYVVLICLVYCVTGIAYTLAI--LFEPGPAQLWSVLLPVVLTLIATSTNDNKIVD 1036

  Fly   602 SYLRWGSHISYLRYGLEGFI 621
            |.    |.:.|.|:.||.|:
plant  1037 SI----SELCYTRWALEAFV 1052

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5853NP_001260309.1 3a01204 97..689 CDD:273361 158/605 (26%)
ABCG_EPDR 102..326 CDD:213180 84/231 (36%)
ABC2_membrane 420..623 CDD:279410 47/267 (18%)
ABCG28NP_200882.4 ABCG_EPDR 496..723 CDD:213180 84/231 (36%)
3a01204 513..1103 CDD:273361 149/582 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 121 1.000 Domainoid score I1855
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.