DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5853 and w

DIOPT Version :9

Sequence 1:NP_001260309.1 Gene:CG5853 / 34322 FlyBaseID:FBgn0032167 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_476787.1 Gene:w / 31271 FlyBaseID:FBgn0003996 Length:687 Species:Drosophila melanogaster


Alignment Length:619 Identity:174/619 - (28%)
Similarity:297/619 - (47%) Gaps:99/619 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 KEILHNVCG-KFPGSQLIAIMGPSGAGKSTLLDALSGFKTTGV----DGSILLNGRRRDLPSFRR 182
            |.:|.|||| .:|| :|:|:||.|||||:|||:||:.....|:    .|..||||:..|....:.
  Fly   110 KHLLKNVCGVAYPG-ELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQA 173

  Fly   183 MSCYITQDDRLQPLLTVNENMHIAADLKLGQTVSYEEKESRIEDILLLLGLYNHDQTL------T 241
            ...|:.|||.....||..|::...|.:::.:.::|.::.:|::.::..|.|.....|:      .
  Fly   174 RCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRV 238

  Fly   242 MRLSGGQKKRLSIAMELINNPTVMFLDEPTTGLDSSSCTKVLELLKKLTSQGRTIICTIHQPTAK 306
            ..||||::|||:.|.|.:.:|.::..||||:||||.:...|:::||||:.:|:|:|.|||||:::
  Fly   239 KGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSE 303

  Fly   307 LFQIFDQVYVLSAGNCVYQGSTQKLVPFLQSVDLPCPMYHNPADYIIEL---------------- 355
            ||::||::.:::.|...:.|:..:.|.|...|...||..:||||:.:::                
  Fly   304 LFELFDKILLMAEGRVAFLGTPSEAVDFFSYVGAQCPTNYNPADFYVQVLAVVPGREIESRDRIA 368

  Fly   356 -ACGEYGYDKV----DTLKLAT----------ENGSC--LTWFHNPSAVL-RAEVLMRKYPIPKK 402
             .|..:...||    :.| |||          |||..  .|||....||| |:.:.:.|.|:..|
  Fly   369 KICDNFAISKVARDMEQL-LATKNLEKPLEQPENGYTYKATWFMQFRAVLWRSWLSVLKEPLLVK 432

  Fly   403 TKSRSLEDTSYSNQCSVLLRRGFIKAKRDTTMTHLRIGVNIAVAALFGAMYDHTGREGSRVLDNY 467
            .:               |::         |||..:.||:     ...|......|     |::..
  Fly   433 VR---------------LIQ---------TTMVAILIGL-----IFLGQQLTQVG-----VMNIN 463

  Fly   468 NLLFAILMHHSMTTMMLTVLTFPMDISILIKEHFNRWYSLKAYYTAMTLVDLPISIISCFFFTVI 532
            ..:|..|.:.:...:..|:..|..::.:.::|..:|.|....|:...|:.:||:.:.....||.|
  Fly   464 GAIFLFLTNMTFQNVFATINVFTSELPVFMREARSRLYRCDTYFLGKTIAELPLFLTVPLVFTAI 528

  Fly   533 VYLWSYQPMEWIR-----FFMFFSISLLTVFVGHSFGLMIGAWFDVVNGTFLA----PVLTIPMM 588
            .|     ||..:|     ||...::..|...|..|||.:|..   ..:.|.:|    |.:.||.:
  Fly   529 AY-----PMIGLRAGVLHFFNCLALVTLVANVSTSFGYLISC---ASSSTSMALSVGPPVIIPFL 585

  Fly   589 MFAGFGVTLRDLPSYLRWGSHISYLRYGLEG-FISAIYGLDRGTLACEEAPYCHYRYPKKFLEEI 652
            :|.||.:....:|.||:|.|::|:.||..|| .|:....::.|.::|..:........|..||.:
  Fly   586 LFGGFFLNSGSVPVYLKWLSYLSWFRYANEGLLINQWADVEPGEISCTSSNTTCPSSGKVILETL 650

  Fly   653 TMRGDQFWNDVIALGVMILVFRFVSYVVLKAKIK 686
            .........|.:.|.::|:.||.::|:.|:.:.:
  Fly   651 NFSAADLPLDYVGLAILIVSFRVLAYLALRLRAR 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5853NP_001260309.1 3a01204 97..689 CDD:273361 174/619 (28%)
ABCG_EPDR 102..326 CDD:213180 78/213 (37%)
ABC2_membrane 420..623 CDD:279410 54/212 (25%)
wNP_476787.1 3a01204 68..687 CDD:273361 174/619 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 79 1.000 Domainoid score I2350
eggNOG 1 0.900 - - E2759_KOG0061
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 1 1.000 - - mtm14984
orthoMCL 1 0.900 - - OOG6_100076
Panther 1 1.100 - - P PTHR48041
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R138
SonicParanoid 1 1.000 - - X52
109.850

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