DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5853 and Abca4

DIOPT Version :9

Sequence 1:NP_001260309.1 Gene:CG5853 / 34322 FlyBaseID:FBgn0032167 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_001101191.1 Gene:Abca4 / 310836 RGDID:1309445 Length:2290 Species:Rattus norvegicus


Alignment Length:705 Identity:160/705 - (22%)
Similarity:260/705 - (36%) Gaps:206/705 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 TPPPIPTPPQVNYTNGNE----------PSKQPPLEPVVEEEVHFDTDALNNLPAREPVDMEFKE 109
            ||.|.....|.:|..|.|          ...:|..|.:.:.|...|:.....||...| .:..|.
  Rat   848 TPLPWYFLLQESYWLGGEGCSTREERALEKTEPLTEEIEDPEYPEDSFFERELPGLVP-GVCVKN 911

  Fly   110 LSLTVKLGFNRGSKEILHNVCGKFPGSQLIAIMGPSGAGKSTLLDALSGFKTTGVDGSILLNGR- 173
            |   ||: |..||:..:..:...|..:|:.|.:|.:||||:|.|..|:|. .....|::|:.|: 
  Rat   912 L---VKV-FEPGSRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL-LPPTSGTVLIGGKD 971

  Fly   174 -RRDLPSFRRMSCYITQDDRLQPLLTVNENMHIAADLKLGQTVSYEEKESRIEDILLLLGLYNHD 237
             ...|.:.|:......|.:.|...|||.|::...|.|| |:  |:||....:|.:|...||::..
  Rat   972 IEISLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK-GR--SWEEARLEMEAMLEDTGLHHKR 1033

  Fly   238 QTLTMRLSGGQKKRLSIAMELINNPTVMFLDEPTTGLDSSSCTKVLELLKKLTSQGRTII-CTIH 301
            ......||||.:::||:|:..:.:..|:.|||||:|:|..|...:.:||.|..| ||||| .|.|
  Rat  1034 NEEAQDLSGGMQRKLSVAIAFVGDSKVVVLDEPTSGVDPYSRRSIWDLLLKYRS-GRTIIMSTHH 1097

  Fly   302 QPTAKLFQIFDQVYVLSAG------------NCVYQGSTQKLVPFLQSV-------DLPCPMYHN 347
            ...|.|  :.|::.::|.|            ||...|....||..::::       :..|     
  Rat  1098 MDEADL--LGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRCGCEGAC----- 1155

  Fly   348 PADYIIELACGEYGYD-----KVDTL----------KLATENGSCLTWFHNPSAVLRAEVLMRK- 396
                    :|...|:.     :||.:          |..|:    |.:.|.|.|.| .|.:.:: 
  Rat  1156 --------SCTSKGFSARCPARVDEITEEQVLDGDVKELTD----LVYHHVPEAKL-VECIGQEL 1207

  Fly   397 -YPIPKK--------TKSRSLEDT------SYSNQCSVLLRRGFIKAKRDTTMTHLRIGVNIAVA 446
             :.:|.|        :..|.||:|      |........|...|:|...|:......:|      
  Rat  1208 IFLLPNKNFKQRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDSESGSKFVG------ 1266

  Fly   447 ALFGAMY--DHTG---------------------------------------------REGSR-V 463
               |...  :|||                                             ..|:| :
  Rat  1267 ---GTQQKREHTGLRHPCSAPVEKHRQHAQASHTCSPGQVDPPKGQPSPEPEDPGIPFNTGARLI 1328

  Fly   464 LDNYNLLFAILMHHSMTTMMLTVLTFPMDISILIKEHFNRWYSLKAYYTAMTLVDLPISIISCFF 528
            |.:...|.....||::.:                ::.|.....|.|.:..:.|:   :|||...|
  Rat  1329 LQHVQALLVKRFHHAVRS----------------RKDFVAQIVLPATFVFLALM---LSIIVPPF 1374

  Fly   529 -----FTVIVYLWSYQPMEWIRFFMFFSISLLTVFVGHSFGLMIGAWFDVVNGTFLAPVLTIPMM 588
                 .|:..:::.:|       |.|||:                   |..|...| .||...::
  Rat  1375 GEFPALTLHPWMYGHQ-------FTFFSM-------------------DEPNNEHL-EVLADVLL 1412

  Fly   589 MFAGFG-VTLRD--LPSYLRWGSHISYLRYGLEGFISAIYGLDRGTLACEEAPYC 640
            ...||| ..|::  ||.| ..|:..|:....:...|:.::...:.| |...:|.|
  Rat  1413 NRPGFGNRCLKEEWLPEY-PCGNATSWKTPSVSPNITHLFQKQKWT-AAHPSPAC 1465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5853NP_001260309.1 3a01204 97..689 CDD:273361 149/653 (23%)
ABCG_EPDR 102..326 CDD:213180 76/238 (32%)
ABC2_membrane 420..623 CDD:279410 44/258 (17%)
Abca4NP_001101191.1 rim_protein 1..2249 CDD:130324 160/705 (23%)
ABC_subfamily_A 907..1126 CDD:213230 73/229 (32%)
ABC_subfamily_A 1915..2135 CDD:213230
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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