DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5853 and abcg4

DIOPT Version :9

Sequence 1:NP_001260309.1 Gene:CG5853 / 34322 FlyBaseID:FBgn0032167 Length:689 Species:Drosophila melanogaster
Sequence 2:XP_004916110.1 Gene:abcg4 / 101734071 XenbaseID:XB-GENE-22063023 Length:639 Species:Xenopus tropicalis


Alignment Length:660 Identity:282/660 - (42%)
Similarity:406/660 - (61%) Gaps:54/660 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 IPTPPQVNYTNGNEPSKQPPLEPVV-----EEEVHFDTDALN--NLPAREPVDMEFKELSLTVKL 116
            ||.|.|......:.|.:.|....::     :.|.|. |||..  :||.|..||:|||:||.:|:.
 Frog     5 IPPPIQATGIAEDGPCQHPQETTLLATHLKKVENHI-TDARRFCHLPKRSAVDIEFKDLSYSVRE 68

  Fly   117 G---FNRGSKEILHNVCGKFPGSQLIAIMGPSGAGKSTLLDALSGFKTTGVDGSILLNGRRRDLP 178
            |   ..||.|.:|..:.|.|...:||.||||||||||||::.|:|::.:|:.|.||:||::|:|.
 Frog    69 GPCWRKRGYKTLLKCLSGMFCSRELIGIMGPSGAGKSTLMNILAGYRESGMTGQILVNGKQRELR 133

  Fly   179 SFRRMSCYITQDDRLQPLLTVNENMHIAADLKLGQTVSYEEKESRIEDILLLLGLYNHDQTLTMR 243
            :||:|||||.|||.|.|.|||.|.|.::.:|||.:.:  |.|:..:.:||..|||.:...|.|:.
 Frog   134 TFRKMSCYIMQDDMLLPHLTVKEAMMVSTNLKLNEKM--EVKKKLVNEILTALGLLDCSGTRTLF 196

  Fly   244 LSGGQKKRLSIAMELINNPTVMFLDEPTTGLDSSSCTKVLELLKKLTSQGRTIICTIHQPTAKLF 308
            |||||:|||:||:||:|||.|||.||||:||||:||.:|:.||..|...|||||||||||:||||
 Frog   197 LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLLNSLAQGGRTIICTIHQPSAKLF 261

  Fly   309 QIFDQVYVLSAGNCVYQGSTQKLVPFLQSVDLPCPMYHNPADYIIELACGEYGYDKVDTLKLATE 373
            ::|:::|:||.|.|:|:||...|:|:|:.:.|.||.||||||:|||||.|||| |....|..|.|
 Frog   262 EMFNKLYILSQGQCIYRGSVTHLIPYLKGLGLHCPTYHNPADFIIELASGEYG-DLNPLLFRAVE 325

  Fly   374 NGSCLTWFHNPSAVLRAEVLMRKYPIPK-KTKSRSLED-----------------TSYSNQCSVL 420
            :|.|                    ||.: |::...|:.                 ||..||..:|
 Frog   326 DGLC--------------------PITRDKSQQTKLDQEHCPNDVSVHVESHTFATSSLNQFCIL 370

  Fly   421 LRRGFIKAKRDTTMTHLRIGVNIAVAALFGAMYDHTGREGSRVLDNYNLLFAILMHHSMTTMMLT 485
            .:|.|:...|||.:||||...::.:..|.|.:|.|.|.:.|:|.:|...||..::......:|.|
 Frog   371 FKRTFLSILRDTVLTHLRFMSHLCIGVLIGLLYLHIGDDASKVFNNTGFLFFSMLFLMFAALMPT 435

  Fly   486 VLTFPMDISILIKEHFNRWYSLKAYYTAMTLVDLPISIISCFFFTVIVYLWSYQPMEWIRFFMFF 550
            |||||:::|:.::||.|.||||||||.|.|:.|:|..|:....:..|||..:.||.|..||.:|.
 Frog   436 VLTFPLEMSVFLREHLNYWYSLKAYYLAKTMADVPFQIVCPVAYCSIVYWMTSQPPEVSRFLLFS 500

  Fly   551 SISLLTVFVGHSFGLMIGAWFDVVN-GTFLAPVLTIPMMMFAGFGVTLRDLPSYLRWGSHISYLR 614
            :::..|..|..|.||:||...:.:. .||:.||..||:::|:||.|:.:.:|:||:|.|:|||:|
 Frog   501 ALATSTALVAQSLGLLIGVASNSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWCSYISYVR 565

  Fly   615 YGLEGFISAIYGLDRGTLACEEAPYCHYRYPKKFLEEITMRGDQFWNDVIALGVMILVFRFVSYV 679
            ||.||.|.||||:||..|.|.|.| |.::.|::.|:|:.:...:.:.|.:.||...|..|.::|:
 Frog   566 YGFEGVILAIYGMDRAPLQCRELP-CTFQLPQQVLQELDVEDAKLYVDFLVLGGFFLGLRLLAYL 629

  Fly   680 VLKAKIKSIR 689
            ||:.::||.|
 Frog   630 VLRYRVKSER 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5853NP_001260309.1 3a01204 97..689 CDD:273361 270/613 (44%)
ABCG_EPDR 102..326 CDD:213180 122/226 (54%)
ABC2_membrane 420..623 CDD:279410 84/203 (41%)
abcg4XP_004916110.1 3a01204 40..639 CDD:273361 273/623 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D177791at33208
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 1 1.000 - - otm49186
Panther 1 1.100 - - O PTHR48041
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.020

Return to query results.
Submit another query.