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Protein Alignment TbCMF46 and NUD1

DIOPT Version :10

Sequence 1:	NP_609325.2	Gene:	TbCMF46 / 34318	FlyBaseID:	FBgn0032163	Length:	566	Species:	Drosophila melanogaster
Sequence 2:	NP_015018.3	Gene:	NUD1 / 854555	SGDID:	S000005900	Length:	851	Species:	Saccharomyces cerevisiae

Alignment Length:	274	Identity:	66/274 - (24%)
Similarity:	110/274 - (40%)	Gaps:	79/274 - (28%)

- Green bases have known domain annotations that are detailed below.

  Fly    59 HQLE--PVVYDRITTMRLEFKNILRIDHLWMMPNLTKLCLNCNKIEVIEHLEMLTALKDLNLSFN 121
            |.||  .:.|:.:.| .|:|   |.:.|     :|.::.|:.|.|:.:|.:.. :.:|.||||.|
Yeast   543 HDLECLDLSYNLLNT-SLKF---LSLCH-----HLQEVNLSYNSIQSLEGIGS-SRMKKLNLSNN 597

  Fly   122 YITRIENLEKLV-----------KLEKLSLFSNRIRKIENIHTLQNLVILSI-GNNLIDTVEGIE 174
            .|..|.:.|:|:           .:|.|.|.:|.|..:.||:.|..|.:|:: ||.|:..||..:
Yeast   598 EINGIIDFEQLILTNNSVVGGWLTVEVLDLSNNNIIGVRNINCLPRLKVLNLNGNPLVSIVESSK 662

  Fly   175 ----RLRFVS-------------------------SLKVLNLEG-NPIAKQPDFPLSLYVIAI-- 207
                .||.:|                         :||:|.|:| ..::|...:|.:|.::.|
Yeast   663 MENGTLRALSIKNTGGALSKLQNYKLDDQFTFPYQNLKILKLDGFAQLSKWQKWPATLQILEING 727

  Fly   208 -----LPQL------NYYEYVFIKTETREEAQKRFYRELREIEDKQEREIQGLETEAREMAEADR 261
                 ||:.      |.|....        |..|.:..|.....|:...:|.|......:..|.:
Yeast   728 GLASSLPRFSSLKSTNLYSLTI--------ANVRDFTHLPVDLSKELPFLQELHLPGNNLQNAHK 784

  Fly   262 LASSF----VEHLD 271
            |..:.    |:.||
Yeast   785 LTKTLPRQSVKFLD 798

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.