DRSC/TRiP Functional Genomics Resources

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Protein Alignment TbCMF46 and LRRCC1

DIOPT Version :10

Sequence 1:NP_609325.2 Gene:TbCMF46 / 34318 FlyBaseID:FBgn0032163 Length:566 Species:Drosophila melanogaster
Sequence 2:XP_016869409.1 Gene:LRRCC1 / 85444 HGNCID:29373 Length:1046 Species:Homo sapiens


Alignment Length:572 Identity:130/572 - (22%)
Similarity:228/572 - (39%) Gaps:148/572 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 ETAYLEEGKKGEARRLHQLEPVVYD-RITTMRLEFKNILR---IDHLWMMPNLTKLCLNCNKIEV 103
            :..::::|       |..:..:..| .:..:.|...||.:   |||:|   ||..|.|:.|:|..
Human    25 DVCFMDKG-------LQSISELSLDSTLHAVNLHCNNISKIEAIDHIW---NLQHLDLSSNQISR 79

  Fly   104 IEHLEMLTALKDLNLSFNYITRIENLEKLVKLEKLSLFSNRIRKIEN---IHTLQN-LVILSIGN 164
            ||.|..||.|..||||.|.||::|.||:|:.|.:|::..|.|..:..   :|.::: |..:.:.:
Human    80 IEGLNTLTKLCTLNLSCNLITKVEGLEELINLTRLNVSYNHIDDLSGLIPLHGIKHKLRYIDLHS 144

  Fly   165 NLIDTVEGIER----LRFVSSLKVLNLEG--NPIAKQPDFPLSLYVIAILPQLNYYEYVFIKT-- 221
            |.||::..:.:    |.|:::| :|..:|  ||:.:.|.  .||..:.:..:|..|..|.::|  
Human   145 NRIDSIHHLLQCMVGLHFLTNL-ILEKDGDDNPVCRLPG--TSLNTVTLPSELRGYRAVILQTLP 206

  Fly   222 ETREEAQKRFYRE---LREIEDKQEREIQGLETEAREMAEADRLASSFVEHLDGMQLYDSLWRDD 283
            :.|....|..:.|   |.||...|.:.::||         .|.|.||           ||.....
Human   207 QLRILDCKNIFGEPVNLTEINSSQLQCLEGL---------LDNLVSS-----------DSPLNIS 251

  Fly   284 EDGRI--LMLVGAPAQELCEEYSKDVYELTQQIYRLGLERFGE--RDEEIRDF---------NAN 335
            ||..|  :.::.||..||                 :.||:|..  .|..:..|         ..|
Human   252 EDEIIDRMPVITAPIDEL-----------------VPLEQFASTPSDAVLTSFMSVCQSSEPEKN 299

  Fly   336 LHEG--QEELQAQG-QRQIEDFLEYKERIFDEMRLKWRELDQRDDDLEQLQAQLDTLTANFEDSL 397
            .||.  |.|::.|. ..||...|.......|.: |:.....:||.|:..     ::...|.::..
Human   300 NHENDLQNEIKLQKLDDQILQLLNETSNSIDNV-LEKDPRPKRDTDITS-----ESDYGNRKECN 358

  Fly   398 NEL-------WESLMAQELHLHEAVEDSTLKFNRK----------ISDLMSNFVEQAQVIFLQLR 445
            .::       :::...|.:..|....:|.:..|||          :|..::|             
Human   359 RKVPRRSKIPYDAKTIQTIKHHNKNYNSFVSCNRKMKPPYLKELYVSSSLAN------------- 410

  Fly   446 DLCSYFADN---MTDIVNQFLSTKLARNELNTIPEELKQCVDDREAVLQLVEGMRTTHTSRVDKR 507
              |....::   .|:|:    ....:.:|.||....::|...:||            ...|.::.
Human   411 --CPMLQESEKPKTEII----KVDQSHSEDNTYQSLVEQLDQERE------------KRWRAEQA 457

  Fly   508 EDRLAQRSRQFIDDMITNLNNKEVDRHRAKILEINSFMEMMTEALANLPGEL 559
            |::|    ..:||::..:.|.|| |.|...:|..:...|::... .|..|:|
Human   458 ENKL----MDYIDELHKHANEKE-DIHSLALLTTDRLKEIIFRE-RNSKGQL 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TbCMF46NP_609325.2 PPP1R42 66..>190 CDD:455733 45/137 (33%)
leucine-rich repeat 69..90 CDD:275378 7/23 (30%)
leucine-rich repeat 91..112 CDD:275378 9/20 (45%)
leucine-rich repeat 113..134 CDD:275378 12/20 (60%)
leucine-rich repeat 135..156 CDD:275378 5/23 (22%)
leucine-rich repeat 157..181 CDD:275378 6/27 (22%)
SMC_prok_B 225..>530 CDD:274008 64/343 (19%)
LRRCC1XP_016869409.1 PPP1R42 30..216 CDD:455733 58/198 (29%)
leucine-rich repeat 45..66 CDD:275378 7/23 (30%)
leucine-rich repeat 67..88 CDD:275378 9/20 (45%)
leucine-rich repeat 89..110 CDD:275378 12/20 (60%)
leucine-rich repeat 111..136 CDD:275378 5/24 (21%)
leucine-rich repeat 137..150 CDD:275378 4/12 (33%)
leucine-rich repeat 185..207 CDD:275380 5/21 (24%)
leucine-rich repeat 223..241 CDD:275380 7/26 (27%)
SMC_prok_B <426..>1044 CDD:274008 21/96 (22%)

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