DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TbCMF46 and Lrriq3

DIOPT Version :10

Sequence 1:NP_609325.2 Gene:TbCMF46 / 34318 FlyBaseID:FBgn0032163 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_083214.2 Gene:Lrriq3 / 74435 MGIID:1921685 Length:633 Species:Mus musculus


Alignment Length:599 Identity:117/599 - (19%)
Similarity:218/599 - (36%) Gaps:177/599 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 HQLEPVVYDRITTMRLEFKNILRIDHLWMMPNLTKLCLNCNKIEVIEHLEMLTALKDLNLSFNYI 123
            |..|.::.|:...:.:::..:    ||..|.|| :.|:               :|:....|.|::
Mouse    18 HYNENIIEDQKDFVFVKYSGL----HLKSMENL-QTCI---------------SLRVCIFSNNFL 62

  Fly   124 TRIENLEKLVKLEKLSLFSNRIRKI--ENIHT-LQNLVILSIGNNLIDTVEGIERLRFVSSLKVL 185
            |.|:.|:...||.||.|..|:|:.:  :|..: |:||.:|.:.:|....::.|..|....||..|
Mouse    63 TDIQPLQSCKKLIKLDLHGNQIKTLPDKNFWSGLKNLKLLYLHDNGFSKLKNICVLSGCVSLIGL 127

  Fly   186 NLEGNPIAKQPDF---------PLSL---YVIA----------------ILPQLNYYEY-VFIKT 221
            .:...|::.:..:         ||..   :||:                ..|.|.:..| ..||.
Mouse   128 TMFDCPVSLKKGYRHVLVNSIWPLKALDHHVISDEEIIQNWRLPERFKTFSPSLFFNLYPALIKG 192

  Fly   222 ETREEAQKRFYRELREIED--KQEREIQGLETEAREMAEADRLASSF--VEHLDGMQL------Y 276
            .|.|:..|.....:..|.:  .....:..::...|.......|:..|  .:|..|..:      .
Mouse   193 TTYEDEIKNIKHIISRINEILAHNSPVLIIQRWIRGFIVRKHLSPYFKHKKHYHGKMIRVLETKL 257

  Fly   277 DSLWRDDED----------------GRIL---MLVGAPAQ-ELCEEYSKDV----YEL-TQQIYR 316
            ..:.|.|||                |::.   .:..:||. :...||.|.:    ||| |:.|  
Mouse   258 ICIGRSDEDKYLEDFFFIKPECNIKGKVAHWKQMRYSPADFKYSTEYGKHISCLSYELKTKYI-- 320

  Fly   317 LGLERFGERDEEIRDFNANLHEGQEELQAQGQRQIEDFLEY-----KERIFDEMRLKWREL--DQ 374
                     |.:.:....::|:||:.::|:.:.:..| .|:     |..::....||:..:  :.
Mouse   321 ---------DGKSKQPRHHIHKGQKAMKAESEDEEVD-TEFRISAMKIPLYSSRSLKYGAMLKEM 375

  Fly   375 RDDDLEQLQAQLDTLTANFEDSLNELW------ESLMAQ----ELHLHEAV----------EDST 419
            :.|...|..................||      |.|..|    :||:.:.|          |:..
Mouse   376 KWDYFPQYLQPFPATRQKPPVKRETLWKLKKRREFLATQRAGMKLHMFDDVDKYYSEQKQHEEEA 440

  Fly   420 LKFNRKISDLMSNFVEQAQVIFLQLRDLCSYFADNMTDIVNQ--FLSTKLARNELNTIPEELKQC 482
            .||...::..::.  |:|.|              |:.:.:|:  :::.||...:..||.:.|:|.
Mouse   441 RKFAAMVTAQVTQ--ERASV--------------NIREKLNKKIYMTRKLMEKDNETIQKGLQQI 489

  Fly   483 VDDREAVLQLVEGMRTTHTSRVDKREDR---LAQRSRQFID-DMITNLNN--------------- 528
            ..:|.|.|:.|             ||.:   ||::.....| .::.:|||               
Mouse   490 WRERLAYLEKV-------------RERKFMFLAEKKLNAADQSLVISLNNERSILLKGITQVERL 541

  Fly   529 -KEVDRHRAKILEI 541
             |.:...:||.|::
Mouse   542 KKHMSEKKAKHLDV 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TbCMF46NP_609325.2 PPP1R42 66..>190 CDD:455733 31/126 (25%)
leucine-rich repeat 69..90 CDD:275378 3/20 (15%)
leucine-rich repeat 91..112 CDD:275378 2/20 (10%)
leucine-rich repeat 113..134 CDD:275378 6/20 (30%)
leucine-rich repeat 135..156 CDD:275378 8/23 (35%)
leucine-rich repeat 157..181 CDD:275378 5/23 (22%)
SMC_prok_B 225..>530 CDD:274008 69/388 (18%)
Lrriq3NP_083214.2 LRR <4..>124 CDD:443914 30/125 (24%)
LRR 1 51..72 6/20 (30%)
leucine-rich repeat 52..73 CDD:275378 6/20 (30%)
LRR 2 73..94 8/20 (40%)
leucine-rich repeat 74..98 CDD:275378 8/23 (35%)
LRR 3 98..119 5/20 (25%)
leucine-rich repeat 99..112 CDD:275378 3/12 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 324..343 4/18 (22%)

Return to query results.
Submit another query.