DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TbCMF46 and Lrrc23

DIOPT Version :10

Sequence 1:NP_609325.2 Gene:TbCMF46 / 34318 FlyBaseID:FBgn0032163 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_001381276.1 Gene:Lrrc23 / 312707 RGDID:1304779 Length:345 Species:Rattus norvegicus


Alignment Length:260 Identity:67/260 - (25%)
Similarity:127/260 - (48%) Gaps:41/260 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 TEEEPLRGF--LEEINCPEPGIID----RQMIETAYLE-EGKKGEARRLHQL------------- 61
            |:...||.:  |..::..|..|.|    ..:....:|: :|.:..:.||::|             
  Rat    84 TDISLLRSYIHLRYVDISENHITDMSPLNSLTHLLWLKADGNQLRSARLNELPYLQIASFSYNQI 148

  Fly    62 ---EPVVYDRITTMRLEFKNILRIDHL--WMMPNLTKLCLNCNKIEVIEHLEMLTALKDLNLSFN 121
               |.:::.|:.::.|:...|.::..|  ..:.||..|.|..|::|....:. |..||:|.|:.|
  Rat   149 TDTEGIIHPRLGSLDLKGNRIHQVTGLDPERLTNLHTLELRANQLETTIGIN-LPKLKNLYLAQN 212

  Fly   122 YITRIENLEKLVKLEKLSLFSNRIRKIENI-HTLQNLVILSIGNNLIDTVEGIERLRFVSSLKVL 185
            .:.::|.||.|..|..|.|..|:|..::.. ..:::|..|::.:|:|..:..:.:||.:..|:.|
  Rat   213 LLKKVEGLENLSNLTTLHLRDNQIETLDGFSKEMKSLQYLNLRSNMISDLGELAKLRDLPKLRAL 277

  Fly   186 NLEGNPIAKQPDF-PLSLYVIAILPQLN--YYEYVFIKTETREEAQKRFYRELRE-IEDKQEREI 246
            .|..||.|.:.|: ..:|..:|.|.:|:  |||     .|.|.||:     |:|: ::::||:|:
  Rat   278 VLLDNPCADETDYRQEALVQMAHLERLDKEYYE-----DEDRAEAE-----EIRQRLKEEQEQEL 332

  Fly   247  246
              Rat   333  332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TbCMF46NP_609325.2 PPP1R42 66..>190 CDD:455733 34/126 (27%)
leucine-rich repeat 69..90 CDD:275378 3/22 (14%)
leucine-rich repeat 91..112 CDD:275378 6/20 (30%)
leucine-rich repeat 113..134 CDD:275378 9/20 (45%)
leucine-rich repeat 135..156 CDD:275378 5/21 (24%)
leucine-rich repeat 157..181 CDD:275378 6/23 (26%)
SMC_prok_B 225..>530 CDD:274008 7/23 (30%)
Lrrc23NP_001381276.1 leucine-rich repeat 75..94 CDD:275380 3/9 (33%)
PPP1R42 80..306 CDD:455733 55/222 (25%)
leucine-rich repeat 95..116 CDD:275380 4/20 (20%)
leucine-rich repeat 117..137 CDD:275380 5/19 (26%)
leucine-rich repeat 138..158 CDD:275380 1/19 (5%)
leucine-rich repeat 159..182 CDD:275380 3/22 (14%)
leucine-rich repeat 183..203 CDD:275380 6/20 (30%)
leucine-rich repeat 204..225 CDD:275380 9/20 (45%)
leucine-rich repeat 226..248 CDD:275380 5/21 (24%)
leucine-rich repeat 249..273 CDD:275380 6/23 (26%)

Return to query results.
Submit another query.