DRSC/TRiP Functional Genomics Resources

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Protein Alignment TbCMF46 and Dnaaf11

DIOPT Version :10

Sequence 1:NP_609325.2 Gene:TbCMF46 / 34318 FlyBaseID:FBgn0032163 Length:566 Species:Drosophila melanogaster
Sequence 2:XP_038934705.1 Gene:Dnaaf11 / 299920 RGDID:1559937 Length:486 Species:Rattus norvegicus


Alignment Length:510 Identity:112/510 - (21%)
Similarity:190/510 - (37%) Gaps:171/510 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 NLTKLCLNCNKIEVIEHLE-MLTALKDLNLSFNYITRIENLEKLVKLEKLSLFSNRIRKIENIHT 153
            :|.:|.|:..:||.:||:: ....||.|.|..|.|.:|||:.||.|||.|:|..|.|.:|||:..
  Rat    36 SLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIAKIENVSKLKKLEYLNLALNNIERIENLEG 100

  Fly   154 LQNLVILSIGNNLIDTVEGIERLRFVSSLKVLNLEGNPIAKQPDFP-LSLYVIAILPQLNYYE-- 215
            .:.|..|.:..|.|..:..|:.|.....|:.|.|.|||.|   ||. ...:|:..|.||.:.:  
  Rat   101 CEWLTKLDLTVNFIGELSSIKTLTHNIHLRELFLVGNPCA---DFDGYREFVVVTLQQLKWLDGK 162

  Fly   216 -------------YVFIKTETREEAQKRFYRELREIEDKQEREIQGLETEAREMAEADRLASSFV 267
                         |..::.:.||:.:....|..:|.|:.|.:    || |..|..:..:.:..| 
  Rat   163 EIERSERIQALQNYAAVEQQIREQEKAYCLRRAKEKEEAQRK----LE-EENESEDKKKSSPGF- 221

  Fly   268 EHLDGMQLYDSLWRDDEDGRILMLVGAPAQELCEEYSKDVYELTQQIYRLGLERFGERDEEIRDF 332
                             ||                   |.|                     .|.
  Rat   222 -----------------DG-------------------DCY---------------------TDI 229

  Fly   333 NANLHEGQEELQAQGQRQIEDFLEYKERIFDEMRLKWRELDQRDDDLE--------QLQAQLDTL 389
            :|:.....|.         :|.|:..|.  .|.:...::.|:.:|||.        ..:::|:||
  Rat   230 HADCPSAMEN---------KDHLQVPET--QEQQHSTKKSDEIEDDLAFWNKPSLFTPESRLETL 283

  Fly   390 -----TANFEDSLNELWE------SLMAQE---LHLHEAVEDSTLKFNRKISDLMSNFVEQAQVI 440
                 ....:|.|:|..:      :|:.::   |:::||..|.:||.:.|          ..|:|
  Rat   284 RHMEKQRKAQDKLSEKKKRVKPPRTLITEDGKVLNVNEAKLDFSLKDDEK----------HNQII 338

  Fly   441 FLQLRDLCSYFADNMTDIVNQFLSTKLARNELNTIPEELKQCVDDREAVLQLVEGMRTTHTSRVD 505
            .    ||..|          :::.|.|.  |::..|..::..|..:...|.|...::...:|   
  Rat   339 L----DLAVY----------RYMDTSLI--EVDVQPTYVRVMVKGKPFQLALSAEVQPDSSS--- 384

  Fly   506 KREDRLAQRSRQF---------IDDMIT-----------NLNNKEVDRHRAKILE 540
                  |:||:..         :.:|||           :.::||..:.|.|.:|
  Rat   385 ------AKRSQTTGHLLICMPKVGEMITGQQTPMSVKTASESSKEQTKPRRKQVE 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TbCMF46NP_609325.2 PPP1R42 66..>190 CDD:455733 37/100 (37%)
leucine-rich repeat 69..90 CDD:275378 112/510 (22%)
leucine-rich repeat 91..112 CDD:275378 7/21 (33%)
leucine-rich repeat 113..134 CDD:275378 11/20 (55%)
leucine-rich repeat 135..156 CDD:275378 9/20 (45%)
leucine-rich repeat 157..181 CDD:275378 6/23 (26%)
SMC_prok_B 225..>530 CDD:274008 58/346 (17%)
Dnaaf11XP_038934705.1 leucine-rich repeat 8..35 CDD:275378
PPP1R42 <37..179 CDD:455733 48/144 (33%)
leucine-rich repeat 37..59 CDD:275378 7/21 (33%)
leucine-rich repeat 60..81 CDD:275378 11/20 (55%)
leucine-rich repeat 82..103 CDD:275378 9/20 (45%)
leucine-rich repeat 104..128 CDD:275378 6/23 (26%)
Blue background indicates that the domain is not in the aligned region.

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