DRSC/TRiP Functional Genomics Resources

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Protein Alignment TbCMF46 and Lrguk

DIOPT Version :10

Sequence 1:NP_609325.2 Gene:TbCMF46 / 34318 FlyBaseID:FBgn0032163 Length:566 Species:Drosophila melanogaster
Sequence 2:XP_017448017.1 Gene:Lrguk / 296968 RGDID:1308226 Length:1271 Species:Rattus norvegicus


Alignment Length:461 Identity:95/461 - (20%)
Similarity:160/461 - (34%) Gaps:157/461 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDEPVSSQPGEDAVEETEEEPLRGFLEEINCPEPGIIDRQMIETAYLEEGKKGEARRLHQLEPVV 65
            :::....:.||.  ||:||..::...:|.:    |::..:.:..|.  :|.....|...|    |
  Rat    75 VEQEEQQEEGES--EESEESEMQNLEDEYD----GVLREENVADAL--DGLGWSGRGTEQ----V 127

  Fly    66 YDRITTMRLEFKNILRIDHLWMMPNLTKLCLNCNKIEVIEHLEMLTALKDLNLS-------FNY- 122
            |..:.....|   ::.:..|....:|.||.|:.|:||.:..:..:..|.:||.|       ||: 
  Rat   128 YRNLNLSHCE---LIDVSILSGYVHLQKLNLSGNRIEDLSCVSCMPYLLELNASQNRLTTFFNFK 189

  Fly   123 -------------------------------------ITRIENLEKLVKLEKLSLFSNRIRKIEN 150
                                                 |..|..|||.:.|..|||..|||..|:.
  Rat   190 PPQNLKQKVDFSSNQISEMYDLSAYHTLTQLILDNNEIEEITGLEKCISLTHLSLAGNRITTIKG 254

  Fly   151 IHTLQNLVILSIGNNLIDTVEGIERLRFVSS---------------------------------- 181
            :.||. :.:||:.||.|:|:.|:|.|:.:.:                                  
  Rat   255 LGTLP-IKVLSVSNNQIETITGLEELKALQNLDLSHNQISSLHGLENHDLLEVINLEDNKIKELS 318

  Fly   182 ----------LKVLNLEGNPIAKQPDFPLSLYVIAILPQLNYYEYVFIKTETREEAQKRFYRELR 236
                      |:||||..|||..:|::  ..:||.:|.:|...:...||.|.:..|..: |....
  Rat   319 EIEYIENLPILRVLNLLRNPIQTKPEY--WFFVIFMLLRLTELDQQKIKVEEKVYAVNK-YDPPP 380

  Fly   237 EIEDKQEREIQGLETEAREMAEADRLASSFVEHLDGMQLYDSLWRDDEDGRILMLVGAP------ 295
            |:...|:.    :......|::..|:..|.:..||...            .:|:|.|..      
  Rat   381 EVVAAQDH----MTHVVNSMSQPQRIFDSTLPSLDAPY------------PMLILTGPEACGKRE 429

  Fly   296 -AQELCEEYSKDVYELTQQIYRLGLERFGERDEEIRDFNANLHEGQEELQAQGQRQIEDFLEYKE 359
             |..||.::|        ..:|.|.                .|..:.....:|.|  .|:....:
  Rat   430 LAHRLCRQFS--------TYFRYGA----------------CHTTRPPYFGEGDR--VDYHFVSQ 468

  Fly   360 RIFDEM 365
            .:||||
  Rat   469 EVFDEM 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TbCMF46NP_609325.2 PPP1R42 66..>190 CDD:455733 45/212 (21%)
leucine-rich repeat 69..90 CDD:275378 2/20 (10%)
leucine-rich repeat 91..112 CDD:275378 7/20 (35%)
leucine-rich repeat 113..134 CDD:275378 11/65 (17%)
leucine-rich repeat 135..156 CDD:275378 10/20 (50%)
leucine-rich repeat 157..181 CDD:275378 9/23 (39%)
SMC_prok_B 225..>530 CDD:274008 26/148 (18%)
LrgukXP_017448017.1 LRR 96..>340 CDD:443914 54/257 (21%)
leucine-rich repeat 129..149 CDD:275380 2/22 (9%)
leucine-rich repeat 150..171 CDD:275380 7/20 (35%)
leucine-rich repeat 172..194 CDD:275380 6/21 (29%)
leucine-rich repeat 196..216 CDD:275380 0/19 (0%)
leucine-rich repeat 217..238 CDD:275380 5/20 (25%)
leucine-rich repeat 258..281 CDD:275380 10/23 (43%)
leucine-rich repeat 282..300 CDD:275380 0/17 (0%)
leucine-rich repeat 304..328 CDD:275380 0/23 (0%)
GMPK 416..592 CDD:238026 17/85 (20%)
PHA03247 <680..1192 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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