DRSC/TRiP Functional Genomics Resources

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Protein Alignment TbCMF46 and Lrrc46

DIOPT Version :10

Sequence 1:NP_609325.2 Gene:TbCMF46 / 34318 FlyBaseID:FBgn0032163 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_001004201.1 Gene:Lrrc46 / 287653 RGDID:1303311 Length:323 Species:Rattus norvegicus


Alignment Length:292 Identity:79/292 - (27%)
Similarity:121/292 - (41%) Gaps:81/292 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PVSSQPGEDAVEETEEEPLRGFLEEINCPEPGIIDRQMIETAYLEEGKKGEARRLHQLEPVVYDR 68
            |...|..::|.::||        |.::..|..|..|.:   .:.|:....| :..|.|     |.
  Rat     2 PGDKQEAKNATQKTE--------EGVHITEALITKRNL---TFPEDEDLSE-KMFHTL-----DD 49

  Fly    69 ITTMRLEFKNILRIDHLWMMPNLTKLCLNCNKIEVIEHLEMLTALKDLNLSFNYITRIENLEKLV 133
            :.|:||:.:.|..|.:|..:.|:..|.|..|||:                      |||||..:.
  Rat    50 LETVRLDGEGITCIGNLERLRNIHSLYLQSNKIQ----------------------RIENLACIT 92

  Fly   134 KLEKLSLFSNRIRKIENIHTLQNLVILSIGNNLIDTVEGIERLRFVSSLKVLNLEGNPIAKQPDF 198
            .|..|||..|:||.:||:..||.|..|.:..|||:|:: ::.|  ..||.:|||.|||...|..:
  Rat    93 SLRFLSLAGNQIRHVENLLDLQYLQFLDLSENLIETLK-LDEL--PQSLLILNLCGNPCTNQDGY 154

  Fly   199 PLSLYVIAILPQLNYYEYVFI----------KTETREE----------AQKRFYREL-REIEDKQ 242
              ...||..||.|...:...|          |:...||          |::.|:::| :|:...|
  Rat   155 --RKMVIGALPLLLDLDKQPILERWTSDEEDKSSDEEEEFPELNGPFCAERGFFKDLEQELHQHQ 217

  Fly   243 EREIQGLETEAREMAEADRLASSFVEHLDGMQ 274
            ||                |..::..|||..|:
  Rat   218 ER----------------RQQAALTEHLSRME 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TbCMF46NP_609325.2 PPP1R42 66..>190 CDD:455733 41/123 (33%)
leucine-rich repeat 69..90 CDD:275378 6/20 (30%)
leucine-rich repeat 91..112 CDD:275378 5/20 (25%)
leucine-rich repeat 113..134 CDD:275378 5/20 (25%)
leucine-rich repeat 135..156 CDD:275378 10/20 (50%)
leucine-rich repeat 157..181 CDD:275378 7/23 (30%)
SMC_prok_B 225..>530 CDD:274008 14/61 (23%)
Lrrc46NP_001004201.1 LRR 1 49..70 6/20 (30%)
leucine-rich repeat 50..71 CDD:275378 6/20 (30%)
PPP1R42 60..177 CDD:455733 47/143 (33%)
LRR 2 71..92 11/42 (26%)
leucine-rich repeat 72..93 CDD:275378 10/42 (24%)
LRR 3 93..114 9/20 (45%)
leucine-rich repeat 94..115 CDD:275378 10/20 (50%)
LRR 4 115..135 7/22 (32%)
leucine-rich repeat 116..137 CDD:275378 7/23 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 252..323
Blue background indicates that the domain is not in the aligned region.

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